RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 DSTYKQ6XUX3 929 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 CROCCP2Q86T23 111 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 GBP7Q8N8V2 638 aaPredicted RBP22.23■■□□□ 1.15
CTCF-202ENST00000401394 FBF1Q8TES7 1133 aa22.23■■□□□ 1.15
CTCF-202ENST00000401394 UBE4BO95155 1302 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 ATRNL1Q5VV63 1379 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 ECE2O60344 883 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 P4HBP07237 508 aaKnown RBP22.22■■□□□ 1.15
CTCF-202ENST00000401394 TPBGLP0DKB5 382 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 GNAZP19086 355 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 KLRC2P26717 231 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 ARSEP51690 589 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 AOC3Q16853 763 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 ZNF394Q53GI3 561 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 TMEM161BQ8NDZ6 487 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 UCMAQ8WVF2 138 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 IDI2Q9BXS1 227 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 CCNE2O96020 404 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 KRT4P19013 534 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 KHDC1Q4VXA5 237 aaKnown RBP22.22■■□□□ 1.15
CTCF-202ENST00000401394 LVRNQ6Q4G3 990 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 MFSD7Q6UXD7 560 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 TMEM130Q8N3G9 435 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 DTX3LQ8TDB6 740 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 DENND1AQ8TEH3 1009 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 PTPRN2Q92932 1015 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 SLCO2A1Q92959 643 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 CNKSR1Q969H4 720 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 STK24Q9Y6E0 443 aa22.22■■□□□ 1.15
CTCF-202ENST00000401394 LGR5O75473 907 aa22.21■■□□□ 1.15
CTCF-202ENST00000401394 MSS51Q4VC12 460 aa22.21■■□□□ 1.15
CTCF-202ENST00000401394 APBB1IPQ7Z5R6 666 aaPredicted RBP22.21■■□□□ 1.15
CTCF-202ENST00000401394 FBXO6Q9NRD1 293 aaPredicted RBP22.21■■□□□ 1.15
CTCF-202ENST00000401394 KANSL3Q9P2N6 904 aa22.21■■□□□ 1.15
CTCF-202ENST00000401394 SLC17A7Q9P2U7 560 aa22.21■■□□□ 1.15
CTCF-202ENST00000401394 LGALS13Q9UHV8 139 aa22.21■■□□□ 1.15
CTCF-202ENST00000401394 F8VP50 259 aa22.21■■□□□ 1.15
CTCF-202ENST00000401394 ATP5DP30049 168 aa22.21■■□□□ 1.15
CTCF-202ENST00000401394 PCK1P35558 622 aa22.21■■□□□ 1.15
CTCF-202ENST00000401394 QARSP47897 775 aaKnown RBP22.21■■□□□ 1.15
CTCF-202ENST00000401394 PLCB3Q01970 1234 aa22.21■■□□□ 1.15
CTCF-202ENST00000401394 MEX3CQ5U5Q3 659 aaKnown RBP22.21■■□□□ 1.15
CTCF-202ENST00000401394 RNPEPL1Q9HAU8 725 aa22.21■■□□□ 1.15
CTCF-202ENST00000401394 NSFP46459 744 aaKnown RBP22.2■■□□□ 1.15
CTCF-202ENST00000401394 PTDSS1P48651 473 aaKnown RBP22.2■■□□□ 1.15
CTCF-202ENST00000401394 CDCA2Q69YH5 1023 aaPredicted RBP22.2■■□□□ 1.15
CTCF-202ENST00000401394 TMEM270Q6UE05 265 aa22.2■■□□□ 1.15
CTCF-202ENST00000401394 ZNF483Q8TF39 744 aaPredicted RBP22.2■■□□□ 1.15
CTCF-202ENST00000401394 ZBTB45Q96K62 511 aaPredicted RBP22.2■■□□□ 1.15
CTCF-202ENST00000401394 TMEM8AQ9HCN3 771 aa22.2■■□□□ 1.15
CTCF-202ENST00000401394 A0A0G2JND7 137 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 SETDB1Q15047 1291 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 ANKRD22Q5VYY1 191 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 FMNL3Q8IVF7 1028 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 TAAR1Q96RJ0 339 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 SYT15Q9BQS2 421 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 CCPG1Q9ULG6 757 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 IVNS1ABPQ9Y6Y0 642 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 KAT6AQ92794 2004 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 TLR3O15455 904 aaKnown RBP22.2■■□□□ 1.14
CTCF-202ENST00000401394 CPA2P48052 419 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 GPC3P51654 580 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 PDIA2Q13087 525 aaKnown RBP22.2■■□□□ 1.14
CTCF-202ENST00000401394 MAMLD1Q13495 774 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 BLMHQ13867 455 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 TKFCQ3LXA3 575 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 GNPTABQ3T906 1256 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 ANO5Q75V66 913 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 ANKRD35Q8N283 1001 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 SPDYE1Q8NFV5 336 aaPredicted RBP22.2■■□□□ 1.14
CTCF-202ENST00000401394 C10orf82Q8WW14 230 aa22.2■■□□□ 1.14
CTCF-202ENST00000401394 HNRNPDLO14979 420 aaKnown RBP22.19■■□□□ 1.14
CTCF-202ENST00000401394 ZBED4O75132 1171 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 ITGBL1O95965 494 aaPredicted RBP22.19■■□□□ 1.14
CTCF-202ENST00000401394 TFDP1Q14186 410 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 SMTNL2Q2TAL5 461 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 TTC7BQ86TV6 843 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 LRRC6Q86X45 466 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 MORC4Q8TE76 937 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 GJD4Q96KN9 370 aaPredicted RBP22.19■■□□□ 1.14
CTCF-202ENST00000401394 SCN9AQ15858 1988 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 CFAP69A5D8W1 941 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 EDF1O60869 148 aaKnown RBP22.19■■□□□ 1.14
CTCF-202ENST00000401394 PROSCO94903 275 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 CALB2P22676 271 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 GDF10P55107 478 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 WDR72Q3MJ13 1102 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 PHC3Q8NDX5 983 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 LRRC8CQ8TDW0 803 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 LRMDAQ9H2I8 198 aa22.19■■□□□ 1.14
CTCF-202ENST00000401394 APOBEC3GQ9HC16 384 aaKnown RBP22.19■■□□□ 1.14
CTCF-202ENST00000401394 RAVER2Q9HCJ3 691 aaKnown RBP22.19■■□□□ 1.14
CTCF-202ENST00000401394 P4HA2O15460 535 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 HARSP12081 509 aaKnown RBP22.18■■□□□ 1.14
CTCF-202ENST00000401394 CYP24A1Q07973 514 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 KCNT1Q5JUK3 1230 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 PPP1R21Q6ZMI0 780 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 NLRX1Q86UT6 975 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 LRRN4Q8WUT4 740 aa22.18■■□□□ 1.14
CTCF-202ENST00000401394 BICD1Q96G01 975 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms