RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 NAA15Q9BXJ9 866 aaKnown RBP15.25■□□□□ 0.03
SKA1-202ENST00000398452 NIF3L1Q9GZT8 377 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 GANQ9H2C0 597 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 ABHD10Q9NUJ1 306 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 NXF1Q9UBU9 619 aaKnown RBP15.25■□□□□ 0.03
SKA1-202ENST00000398452 TUBGCP4Q9UGJ1 667 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 FHOD1Q9Y613 1164 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 CITO14578 2027 aa15.25■□□□□ 0.03
SKA1-202ENST00000398452 LTBP2Q14767 1821 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 ARHGEF37A1IGU5 675 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 LRRC53A6NM62 1247 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 MEIS3P2A8K0S8 358 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 PTGESO14684 152 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 UPP2O95045 317 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 CST3P01034 146 aaPredicted RBP15.24■□□□□ 0.03
SKA1-202ENST00000398452 FERP16591 822 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 PAX3P23760 479 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 TAF6P49848 677 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 GUCY2FP51841 1108 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 EPHB4P54760 987 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 TUSC3Q13454 348 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 CUL2Q13617 745 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 DRAP1Q14919 205 aaPredicted RBP15.24■□□□□ 0.03
SKA1-202ENST00000398452 ZBTB6Q15916 424 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 WDR72Q3MJ13 1102 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 C9orf57Q5W0N0 161 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 PHLDB3Q6NSJ2 640 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 GPR153Q6NV75 609 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 PDXDC1Q6P996 788 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 LRRC8AQ8IWT6 810 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 TTC39CQ8N584 583 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 JAKMIP2Q96AA8 810 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 C18orf25Q96B23 403 aaPredicted RBP15.24■□□□□ 0.03
SKA1-202ENST00000398452 FAM84AQ96KN4 292 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 PPP1R10Q96QC0 940 aaKnown RBP15.24■□□□□ 0.03
SKA1-202ENST00000398452 MMS19Q96T76 1030 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 BAG1Q99933 345 aaPredicted RBP15.24■□□□□ 0.03
SKA1-202ENST00000398452 TTYH3Q9C0H2 523 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 SIX2Q9NPC8 291 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 NUB1Q9Y5A7 615 aa15.24■□□□□ 0.03
SKA1-202ENST00000398452 EPHB6O15197 1021 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 MEFVO15553 781 aaPredicted RBP15.23■□□□□ 0.03
SKA1-202ENST00000398452 NOL4O94818 638 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 IPO7O95373 1038 aaKnown RBP15.23■□□□□ 0.03
SKA1-202ENST00000398452 STAU1O95793 577 aaKnown RBP15.23■□□□□ 0.03
SKA1-202ENST00000398452 ACRP10323 421 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 FGFR1P11362 822 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 KRT5P13647 590 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 LRPAP1P30533 357 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 HS1BP3Q53T59 392 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 TDRD12Q587J7 1177 aaKnown RBP15.23■□□□□ 0.03
SKA1-202ENST00000398452 ZNF697Q5TEC3 545 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 SPOPLQ6IQ16 392 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 GJB7Q6PEY0 223 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 VPS36Q86VN1 386 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 ARHGEF19Q8IW93 802 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 SYN2Q92777 582 aaPredicted RBP15.23■□□□□ 0.03
SKA1-202ENST00000398452 TATDN2Q93075 761 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 RNPC3Q96LT9 517 aaKnown RBP15.23■□□□□ 0.03
SKA1-202ENST00000398452 DEF6Q9H4E7 631 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 RNF19AQ9NV58 838 aa15.23■□□□□ 0.03
SKA1-202ENST00000398452 BZW2Q9Y6E2 419 aaKnown RBP15.23■□□□□ 0.03
SKA1-202ENST00000398452 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.22■□□□□ 0.03
SKA1-202ENST00000398452 CASTOR2A6NHX0 329 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 TBKBP1A7MCY6 615 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 PODXLO00592 558 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 INPPL1O15357 1258 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 LRRN2O75325 713 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 SOX5P35711 763 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 BPIFB4P59827 614 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 APBA1Q02410 837 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 ARID5AQ03989 594 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 GOLGA8FQ08AF8 430 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 GOLGA8DPQ0D2H9 430 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 SMYD5Q6GMV2 418 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 CYP26C1Q6V0L0 522 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 DSTYKQ6XUX3 929 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 OTOP2Q7RTS6 562 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 TMTC1Q8IUR5 882 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 LRRC43Q8N309 656 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 TC2NQ8N9U0 490 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 DNAJC7Q99615 494 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 VRTNQ9H8Y1 702 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 CYP3A43Q9HB55 503 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 SIX4Q9UIU6 781 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 PCDHB4Q9Y5E5 795 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 SNX9Q9Y5X1 595 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 RALGAPA2Q2PPJ7 1873 aa15.22■□□□□ 0.03
SKA1-202ENST00000398452 CARNS1A5YM72 827 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 F8VZ95 297 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 PIRO00625 290 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 HUS1O60921 280 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 EMP3P54852 163 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 KLHL30Q0D2K2 578 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 CLLU1OSQ5K130 101 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 SPOUT1Q5T280 376 aaKnown RBP15.21■□□□□ 0.03
SKA1-202ENST00000398452 SCARA5Q6ZMJ2 495 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.21■□□□□ 0.03
SKA1-202ENST00000398452 BAP1Q92560 729 aa15.21■□□□□ 0.03
SKA1-202ENST00000398452 ZBED2Q9BTP6 218 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms