RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 TTPALQ9BTX7 342 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 TRIM62Q9BVG3 475 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 SPZ1Q9BXG8 430 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 MRPL4Q9BYD3 311 aaKnown RBP8.64□□□□□ -1.03
LIMS1-203ENST00000393310 NUF2Q9BZD4 464 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 EPHX3Q9H6B9 360 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 INTUQ9ULD6 942 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 SOWAHBA6NEL2 793 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 TIMM44O43615 452 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 SRFP11831 508 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 HPDP32754 393 aaPredicted RBP8.64□□□□□ -1.03
LIMS1-203ENST00000393310 PDGFRLQ15198 375 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 GDF6Q6KF10 455 aaPredicted RBP8.64□□□□□ -1.03
LIMS1-203ENST00000393310 TPRG1Q6ZUI0 275 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 LRP10Q7Z4F1 713 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 SPATA21Q7Z572 469 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 SLC51AQ86UW1 340 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 DCLK2Q8N568 766 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 FOXJ1Q92949 421 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 ANKRD36BP1Q96IX9 119 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 VPS50Q96JG6 964 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 SNX27Q96L92 541 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 ACAP3Q96P50 834 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 STN1Q9H668 368 aaKnown RBP8.64□□□□□ -1.03
LIMS1-203ENST00000393310 PALMDQ9NP74 551 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 PLAGL2Q9UPG8 496 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 AK5Q9Y6K8 562 aa8.64□□□□□ -1.03
LIMS1-203ENST00000393310 FER1L6Q2WGJ9 1857 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 ENO4A6NNW6 628 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 GSG1L2A8MUP6 293 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 TADA3O75528 432 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 STAMBPO95630 424 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 FGAP02671 866 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 UBA1P22314 1058 aaKnown RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 CDK7P50613 346 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 ITGB3BPQ13352 177 aaPredicted RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 ANGPT1Q15389 498 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 NEK11Q8NG66 645 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 SNX19Q92543 992 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 DHX38Q92620 1227 aaKnown RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 ABTB1Q969K4 478 aaPredicted RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 TIPINQ9BVW5 301 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 OSBPL10Q9BXB5 764 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 NDEL1Q9GZM8 345 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 FAM124BQ9H5Z6 455 aaPredicted RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 MTRF1LQ9UGC7 380 aaKnown RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 KCNH3Q9ULD8 1083 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 COL4A3BPQ9Y5P4 624 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 TRIM64A6NGJ6 449 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 TRIM64BA6NI03 449 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 P4HA2O15460 535 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 B3GAT3O94766 335 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 DDX6P26196 483 aaKnown RBP eCLIP8.63□□□□□ -1.038e-6■□□□□ 9.7
LIMS1-203ENST00000393310 PNPLA4P41247 253 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 TNNC1P63316 161 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 PLIN5Q00G26 463 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 GRIK5Q16478 980 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 HERC4Q5GLZ8 1057 aaPredicted RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 IL27RAQ6UWB1 636 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 RBM12BQ8IXT5 1001 aaKnown RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 TTC39CQ8N584 583 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 GPR152Q8TDT2 470 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 SCG3Q8WXD2 468 aaKnown RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 NOX5Q96PH1 765 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 HAPLN3Q96S86 360 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 CAPS2Q9BXY5 557 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 GDPD2Q9HCC8 539 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 PDGFCQ9NRA1 345 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 VPS45Q9NRW7 570 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 ATPIF1Q9UII2 106 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 PCDHA12Q9UN75 941 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 KANSL1LA0AUZ9 987 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 ENPP3O14638 875 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 OR52Z1P0C646 297 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 IL9P15248 144 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 PECAM1P16284 738 aaPredicted RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 USP11P51784 963 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 MLF2Q15773 248 aaPredicted RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 FXNQ16595 210 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 CALCRLQ16602 461 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 MGAT5BQ3V5L5 792 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 ANKRD13BQ86YJ7 626 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 SPATA2LQ8IUW3 424 aaPredicted RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 FAM81AQ8TBF8 368 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 LZICQ8WZA0 190 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 LENG1Q96BZ8 264 aaPredicted RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 ZNF304Q9HCX3 659 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 TRPC7Q9HCX4 862 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 DDX25Q9UHL0 483 aaKnown RBP8.63□□□□□ -1.03
LIMS1-203ENST00000393310 SNX5Q9Y5X3 404 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 UMODL1Q5DID0 1318 aa8.63□□□□□ -1.03
LIMS1-203ENST00000393310 BUB1BO60566 1050 aaPredicted RBP8.62□□□□□ -1.03
LIMS1-203ENST00000393310 CCNCP24863 283 aa8.62□□□□□ -1.03
LIMS1-203ENST00000393310 DNAJA1P31689 397 aaKnown RBP8.62□□□□□ -1.03
LIMS1-203ENST00000393310 NHLH1Q02575 133 aa8.62□□□□□ -1.03
LIMS1-203ENST00000393310 ZBTB16Q05516 673 aa8.62□□□□□ -1.03
LIMS1-203ENST00000393310 PPP2R5CQ13362 524 aa8.62□□□□□ -1.03
LIMS1-203ENST00000393310 SCN4BQ8IWT1 228 aa8.62□□□□□ -1.03
LIMS1-203ENST00000393310 RNF149Q8NC42 400 aa8.62□□□□□ -1.03
LIMS1-203ENST00000393310 GTPBP2Q9BX10 602 aaKnown RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms