RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 NFKBIEO00221 500 aa18.78■□□□□ 0.6
SQSTM1-202ENST00000389805 RTN3O95197 1032 aaPredicted RBP18.78■□□□□ 0.6
SQSTM1-202ENST00000389805 CETPP11597 493 aa18.78■□□□□ 0.6
SQSTM1-202ENST00000389805 SP100P23497 879 aaPredicted RBP18.78■□□□□ 0.6
SQSTM1-202ENST00000389805 GHRHRQ02643 423 aa18.78■□□□□ 0.6
SQSTM1-202ENST00000389805 CETN1Q12798 172 aa18.78■□□□□ 0.6
SQSTM1-202ENST00000389805 MYBPC2Q14324 1141 aa18.78■□□□□ 0.6
SQSTM1-202ENST00000389805 NOP9Q86U38 636 aaKnown RBP18.78■□□□□ 0.6
SQSTM1-202ENST00000389805 MFN1Q8IWA4 741 aa18.78■□□□□ 0.6
SQSTM1-202ENST00000389805 ART4Q93070 314 aa18.78■□□□□ 0.6
SQSTM1-202ENST00000389805 AAASQ9NRG9 546 aa18.78■□□□□ 0.6
SQSTM1-202ENST00000389805 CHKBQ9Y259 395 aa18.78■□□□□ 0.6
SQSTM1-202ENST00000389805 DIS3Q9Y2L1 958 aaKnown RBP18.78■□□□□ 0.6
SQSTM1-202ENST00000389805 SPAG7O75391 227 aa18.77■□□□□ 0.6
SQSTM1-202ENST00000389805 NR3C2P08235 984 aa18.77■□□□□ 0.6
SQSTM1-202ENST00000389805 TAC1P20366 129 aa18.77■□□□□ 0.6
SQSTM1-202ENST00000389805 GMPSP49915 693 aaPredicted RBP18.77■□□□□ 0.6
SQSTM1-202ENST00000389805 HMGCS2P54868 508 aa18.77■□□□□ 0.6
SQSTM1-202ENST00000389805 SETDB1Q15047 1291 aa18.77■□□□□ 0.6
SQSTM1-202ENST00000389805 MTFR1Q15390 333 aa18.77■□□□□ 0.6
SQSTM1-202ENST00000389805 NKIRAS1Q9NYS0 192 aa18.77■□□□□ 0.6
SQSTM1-202ENST00000389805 FER1L6Q2WGJ9 1857 aa18.77■□□□□ 0.6
SQSTM1-202ENST00000389805 PEX10O60683 326 aa18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 RGS20O76081 388 aa18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 MAPTP10636 758 aaKnown RBP18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 CHRNB2P17787 502 aa18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 COILP38432 576 aaPredicted RBP18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 NCKAP1LP55160 1127 aa18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 RNF43Q68DV7 783 aa18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 SNRNP48Q6IEG0 339 aaKnown RBP18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 C1orf54Q8WWF1 131 aa18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 DHX38Q92620 1227 aaKnown RBP18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 CEP170P1Q96L14 293 aa18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 RUNDC3BQ96NL0 473 aa18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 ADAM33Q9BZ11 813 aa18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 ROPN1BQ9BZX4 212 aaPredicted RBP18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 ROPN1Q9HAT0 212 aaPredicted RBP18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 METTL5Q9NRN9 209 aaKnown RBP18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 PCYOX1Q9UHG3 505 aa18.77■□□□□ 0.59
SQSTM1-202ENST00000389805 WFS1O76024 890 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 TNFAIP1Q13829 316 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 SEL1L2Q5TEA6 688 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 SWSAP1Q6NVH7 229 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 SLC39A4Q6P5W5 647 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 NLRX1Q86UT6 975 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 UBL4BQ8N7F7 174 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 DENND2DQ9H6A0 471 aaPredicted RBP18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 ASIC3Q9UHC3 531 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 ADGRA3Q8IWK6 1321 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 SYNGAP1Q96PV0 1343 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 DLATP10515 647 aaKnown RBP18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 COMTP21964 271 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 DALRD3Q5D0E6 543 aaKnown RBP18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 VSIG10LQ86VR7 867 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 C12orf56Q8IXR9 622 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 TAS1R2Q8TE23 839 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 EPS8L1Q8TE68 723 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 LRRC37BQ96QE4 947 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 PI4K2AQ9BTU6 479 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 TRIM4Q9C037 500 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 KMT5AQ9NQR1 393 aa18.76■□□□□ 0.59
SQSTM1-202ENST00000389805 BACE1P56817 501 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 ALCAMQ13740 583 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 LAMB3Q13751 1172 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 TSNAXIP1Q2TAA8 658 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 GALNT15Q8N3T1 639 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 ASAP3Q8TDY4 903 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 SERPINB12Q96P63 405 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 PYGLP06737 847 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 CTNNA2P26232 953 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 ZNF280AP59817 542 aaPredicted RBP18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 APBB1IPQ7Z5R6 666 aaPredicted RBP18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 MAGEB18Q96M61 343 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 WRNIP1Q96S55 665 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 VPS33BQ9H267 617 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 LRMDAQ9H2I8 198 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 PCDHA10Q9Y5I2 948 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 PASKQ96RG2 1323 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 THAP12O43422 761 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 ALDH3A1P30838 453 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 JAK3P52333 1124 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 KRT76Q01546 638 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 DMP1Q13316 513 aaPredicted RBP18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 PRKG1Q13976 671 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 LMBRD2Q68DH5 695 aaPredicted RBP18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 SPIRE2Q8WWL2 714 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 ZSWIM1Q9BR11 485 aa18.75■□□□□ 0.59
SQSTM1-202ENST00000389805 NPTXRO95502 500 aa18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 SKIV2L2P42285 1042 aaKnown RBP18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 POLGP54098 1239 aaPredicted RBP18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 CCDC6Q16204 474 aa18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 RFWD3Q6PCD5 774 aa18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 ARHGEF18Q6ZSZ5 1173 aa18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 POMGNT1Q8WZA1 660 aa18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 SLC7A6OSQ96CW6 309 aaPredicted RBP18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 RCN2Q14257 317 aa18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 TRMT10CQ7L0Y3 403 aaKnown RBP18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 ST6GALNAC4Q9H4F1 302 aa18.74■□□□□ 0.59
SQSTM1-202ENST00000389805 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.74■□□□□ 0.595e-6■■■□□ 15.4
SQSTM1-202ENST00000389805 NMRK1Q9NWW6 199 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms