RNA–Protein interactions for RNA: ENST00000378244.6

DEPDC4-202, Transcript of DEP domain containing 4, humanhuman

TSL 2

Gene DEPDC4, Length 2,337 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-202ENST00000378244 PTPN14Q15678 1187 aa12.63□□□□□ -0.39
DEPDC4-202ENST00000378244 TCEAL5Q5H9L2 206 aa12.63□□□□□ -0.39
DEPDC4-202ENST00000378244 ZC3H3Q8IXZ2 948 aaKnown RBP12.63□□□□□ -0.39
DEPDC4-202ENST00000378244 MRPL43Q8N983 215 aaKnown RBP12.63□□□□□ -0.39
DEPDC4-202ENST00000378244 CXorf38Q8TB03 319 aa12.63□□□□□ -0.39
DEPDC4-202ENST00000378244 HPDLQ96IR7 371 aa12.63□□□□□ -0.39
DEPDC4-202ENST00000378244 SENP8Q96LD8 212 aa12.63□□□□□ -0.39
DEPDC4-202ENST00000378244 CEP63Q96MT8 703 aa12.63□□□□□ -0.39
DEPDC4-202ENST00000378244 NFE2L3Q9Y4A8 694 aa12.63□□□□□ -0.39
DEPDC4-202ENST00000378244 SNX9Q9Y5X1 595 aa12.63□□□□□ -0.39
DEPDC4-202ENST00000378244 TMEM189-UBE2V1I3L0A0 370 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 MAPK13O15264 365 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 SLC16A3O15427 465 aaKnown RBP12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 C4BPAP04003 597 aaKnown RBP12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 CCDC192P0DO97 292 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 CLDN10P78369 228 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 WDR72Q3MJ13 1102 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 PI4K2AQ9BTU6 479 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 TLE6Q9H808 572 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 NGRNQ9NPE2 291 aaKnown RBP12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 CHST7Q9NS84 486 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 NXF1Q9UBU9 619 aaKnown RBP12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 RALGAPA2Q2PPJ7 1873 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 C2orf71A6NGG8 1288 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 CYB561D2O14569 222 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 IKBKBO14920 756 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 EFEMP2O95967 443 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 CNPP09543 421 aaKnown RBP12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 ARPP19P56211 112 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 ELAVL2Q12926 359 aaKnown RBP12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 MYO1EQ12965 1108 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 NCOA4Q13772 614 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 SMC1AQ14683 1233 aaKnown RBP12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 BMS1Q14692 1282 aaKnown RBP12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 KIAA0319Q5VV43 1072 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 IRF2BP1Q8IU81 584 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 RNF168Q8IYW5 571 aaPredicted RBP12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 TAS1R2Q8TE23 839 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 SLC35C1Q96A29 364 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 SUSD3Q96L08 255 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 CNOT6LQ96LI5 555 aaKnown RBP12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 MMS19Q96T76 1030 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 LMAN2LQ9H0V9 348 aa12.62□□□□□ -0.39
DEPDC4-202ENST00000378244 COL4A4P53420 1690 aaPredicted RBP12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 LETM1O95202 739 aaPredicted RBP12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 VNN1O95497 513 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 FGFR1OPO95684 399 aaKnown RBP12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 SPATA31D3P0C874 917 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 PIK3CAP42336 1068 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 DSG1Q02413 1049 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 ZACNQ401N2 412 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 CBWD6Q4V339 395 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 CBWD3Q5JTY5 395 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 CBWD5Q5RIA9 395 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 VARS2Q5ST30 1063 aaKnown RBP12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 LLGL2Q6P1M3 1020 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 SPATA31D4Q6ZUB0 917 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 FRMD5Q7Z6J6 570 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 PALB2Q86YC2 1186 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 ZNF560Q96MR9 790 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 NSUN3Q9H649 340 aaKnown RBP12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 METTL14Q9HCE5 456 aaKnown RBP12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 FANCLQ9NW38 375 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 BRWD1Q9NSI6 2320 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 TEX28O15482 410 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 FGFR3P22607 806 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 KLRC2P26717 231 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 MXI1P50539 228 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 PSMD5Q16401 504 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 SV2CQ496J9 727 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 WSCD1Q658N2 575 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 SPOPLQ6IQ16 392 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 AOPEPQ8N6M6 819 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 LNX1Q8TBB1 728 aaPredicted RBP12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 HERC2P3Q9BVR0 1158 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 SCN1AP35498 2009 aa12.61□□□□□ -0.39
DEPDC4-202ENST00000378244 PES1O00541 588 aaKnown RBP12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 ADAM12O43184 909 aa12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 HLA-DRAP01903 254 aa12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 PNPLA4P41247 253 aa12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 MTIF2P46199 727 aaKnown RBP12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 ZNF165P49910 485 aa12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 AP3M2P53677 418 aa12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 YWHAHQ04917 246 aaPredicted RBP12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 ZNF699Q32M78 642 aa12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 KRT39Q6A163 491 aa12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 FOXR2Q6PJQ5 311 aa12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 RSPO2Q6UXX9 243 aaPredicted RBP12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 LRRC52Q8N7C0 313 aa12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 MAFAQ8NHW3 353 aaPredicted RBP12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 ENOX1Q8TC92 643 aaKnown RBP12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 NAT10Q9H0A0 1025 aaKnown RBP12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 LMCD1Q9NZU5 365 aa12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 CDY1Q9Y6F8 540 aa12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 PDCD11Q14690 1871 aaKnown RBP12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 M0QZQ0 153 aa12.6□□□□□ -0.39
DEPDC4-202ENST00000378244 FSCN2O14926 492 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms