RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 NIPA2Q8N8Q9 360 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 C2orf69Q8N8R5 385 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 RNF149Q8NC42 400 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 EXD1Q8NHP7 514 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 TARS2Q9BW92 718 aaKnown RBP9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 RPF1Q9H9Y2 349 aaKnown RBP9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 PPCSQ9HAB8 311 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 PRDM16Q9HAZ2 1276 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 OSGEPQ9NPF4 335 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 TMEM51Q9NW97 253 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 GOLGA6AQ9NYA3 693 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 ITGA11Q9UKX5 1188 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 PCDHB4Q9Y5E5 795 aa9.29□□□□□ -0.92
SNRNP40-202ENST00000373720 TMEM150BA6NC51 233 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 RAD51CO43502 376 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 XPOTO43592 962 aaKnown RBP9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 RNF40O75150 1001 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 TOMM70O94826 608 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 SYF2O95926 243 aaKnown RBP9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 MMEP08473 750 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 MYZAPP0CAP1 466 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 COMTP21964 271 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 MMP8P22894 467 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 ACTN2P35609 894 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 PSEN2P49810 448 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 SKOR1P84550 965 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 CALCOCO2Q13137 446 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 PRKG1Q13976 671 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 GRB14Q14449 540 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 DGKDQ16760 1214 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 LY6KQ17RY6 165 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 HSDL1Q3SXM5 330 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 WDR78Q5VTH9 848 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 DUPD1Q68J44 220 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 EFCAB12Q6NXP0 572 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 MON1BQ7L1V2 547 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 ARMCX2Q7L311 632 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 HOOK3Q86VS8 718 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 VSIG1Q86XK7 387 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 SLC13A5Q86YT5 568 aaPredicted RBP9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 RCOR2Q8IZ40 523 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 LINC01465Q8N7H1 131 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 UBR7Q8N806 425 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 CCDC89Q8N998 374 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 TTC13Q8NBP0 860 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 ZNF516Q92618 1163 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 KCTD12Q96CX2 325 aaKnown RBP9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 MS4A14Q96JA4 679 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 TMEM109Q9BVC6 243 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 KIFC3Q9BVG8 833 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 ROPN1BQ9BZX4 212 aaPredicted RBP9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 ROPN1Q9HAT0 212 aaPredicted RBP9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 ADAM22Q9P0K1 906 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 WHRNQ9P202 907 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 VPS18Q9P253 973 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 COG5Q9UP83 839 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 SCAF8Q9UPN6 1271 aaKnown RBP9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 ZNF236Q9UL36 1845 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 OTOFQ9HC10 1997 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 NRCAMQ92823 1304 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 LRRC37A2A6NM11 1700 aa9.28□□□□□ -0.92
SNRNP40-202ENST00000373720 LCTP09848 1927 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 ZBTB42B2RXF5 422 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 TISP43B9A030 160 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 PDHXO00330 501 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 ABLIM1O14639 778 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 SHOX2O60902 331 aaPredicted RBP9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 PPFIA2O75334 1257 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 C22orf31O95567 290 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 ECEL1O95672 775 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 HMGCRP04035 888 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 KRT7P08729 469 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 NUDT17P0C025 328 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 SETSIPP0DME0 302 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 GNAT1P11488 350 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 ATF7P17544 494 aaPredicted RBP9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 ATP5DP30049 168 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 GGCXP38435 758 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 ACOT2P49753 483 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 NOMO3P69849 1222 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 SP4Q02446 784 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 MBTD1Q05BQ5 628 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 ARHGAP1Q07960 439 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 MYO1EQ12965 1108 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 HLTFQ14527 1009 aaKnown RBP eCLIP9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 ZNF268Q14587 947 aaPredicted RBP9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 MESDQ14696 234 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 CCNG2Q16589 344 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 ZNF568Q3ZCX4 644 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 ZNF667Q5HYK9 610 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 AGBL2Q5U5Z8 902 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 DMRTA1Q5VZB9 504 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 TAPT1Q6NXT6 567 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 PAXIP1Q6ZW49 1069 aaPredicted RBP9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 TRMT10CQ7L0Y3 403 aaKnown RBP9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 ZDHHC17Q8IUH5 632 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 RELL1Q8IUW5 271 aa9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 RBBP8NLQ8NC74 664 aaPredicted RBP9.27□□□□□ -0.93
SNRNP40-202ENST00000373720 ATL2Q8NHH9 583 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms