RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MYPNQ86TC9 1320 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 LTBP4Q8N2S1 1624 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 LRRD1A4D1F6 860 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 FDX1P10109 184 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 MSH2P43246 934 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 STRN3Q13033 797 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 SEPT7Q16181 437 aaKnown RBP12.86□□□□□ -0.35
CLIP3-201ENST00000360535 CGB2Q6NT52 195 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 C12orf56Q8IXR9 622 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 PDCD2LQ9BRP1 358 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 PTPRJQ12913 1337 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 CFAP73A6NFT4 308 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 PROSCO94903 275 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 ASNSP08243 561 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 POTEJP0CG39 1038 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 NEFHP12036 1026 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 WDR4P57081 412 aaKnown RBP12.86□□□□□ -0.35
CLIP3-201ENST00000360535 LACTBP83111 547 aaPredicted RBP12.86□□□□□ -0.35
CLIP3-201ENST00000360535 MTMR2Q13614 643 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 TDRD10Q5VZ19 366 aaKnown RBP12.86□□□□□ -0.35
CLIP3-201ENST00000360535 TXNRD3NBQ6F5E7 133 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 MFSD7Q6UXD7 560 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 ZBTB33Q86T24 672 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 DCTN4Q9UJW0 460 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 PCDHA10Q9Y5I2 948 aa12.86□□□□□ -0.35
CLIP3-201ENST00000360535 ZNFX1Q9P2E3 1918 aaKnown RBP12.85□□□□□ -0.35
CLIP3-201ENST00000360535 LTBP1Q14766 1721 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 A0A1W2PPM1 405 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 F8VP50 259 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 MAPTP10636 758 aaKnown RBP12.85□□□□□ -0.35
CLIP3-201ENST00000360535 PECAM1P16284 738 aaPredicted RBP12.85□□□□□ -0.35
CLIP3-201ENST00000360535 TAC1P20366 129 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 PTGER2P43116 358 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 GAD2Q05329 585 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 CYP4A22Q5TCH4 519 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 PRAMEF18Q5VWM3 479 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 RSBN1LQ6PCB5 846 aaPredicted RBP12.85□□□□□ -0.35
CLIP3-201ENST00000360535 ANKRD35Q8N283 1001 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 MAIP1Q8WWC4 291 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 MCEEQ96PE7 176 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 TARS2Q9BW92 718 aaKnown RBP12.85□□□□□ -0.35
CLIP3-201ENST00000360535 MYLK2Q9H1R3 596 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 TRABDQ9H4I3 376 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 CCDC134Q9H6E4 229 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 ZWILCHQ9H900 591 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 FAM47DPA6NHR8 397 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 PAX7P23759 505 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 RPA3P35244 121 aaPredicted RBP12.85□□□□□ -0.35
CLIP3-201ENST00000360535 CETN2P41208 172 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 ATP11AP98196 1134 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 OVGP1Q12889 678 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 PDIA2Q13087 525 aaKnown RBP12.85□□□□□ -0.35
CLIP3-201ENST00000360535 MAMLD1Q13495 774 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 TNFAIP8L3Q5GJ75 292 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 KCNT1Q5JUK3 1230 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 HHATQ5VTY9 493 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 DPH6Q7L8W6 267 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 IVNS1ABPQ9Y6Y0 642 aa12.85□□□□□ -0.35
CLIP3-201ENST00000360535 NPM3O75607 178 aaKnown RBP12.84□□□□□ -0.35
CLIP3-201ENST00000360535 ERFP50548 548 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 POLGP54098 1239 aaPredicted RBP12.84□□□□□ -0.35
CLIP3-201ENST00000360535 BNIP1Q12981 228 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 NFX1Q12986 1120 aaKnown RBP12.84□□□□□ -0.35
CLIP3-201ENST00000360535 EFTUD2Q15029 972 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLIP3-201ENST00000360535 SETDB1Q15047 1291 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 RBBP8NLQ8NC74 664 aaPredicted RBP12.84□□□□□ -0.35
CLIP3-201ENST00000360535 FBF1Q8TES7 1133 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 ATG4CQ96DT6 458 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 MFSD14AQ96MC6 490 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 MOV10L1Q9BXT6 1211 aaKnown RBP12.84□□□□□ -0.35
CLIP3-201ENST00000360535 RXFP1Q9HBX9 757 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 APOBEC3GQ9HC16 384 aaKnown RBP12.84□□□□□ -0.35
CLIP3-201ENST00000360535 SLC24A3Q9HC58 644 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 AGO2Q9UKV8 859 aaKnown RBP12.84□□□□□ -0.35
CLIP3-201ENST00000360535 PHTF1Q9UMS5 762 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 NEBLO76041 1014 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 CBX6O95503 412 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 OSTNP61366 133 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 SUPT20HQ8NEM7 779 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 OR5B17Q8NGF7 314 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 CNKSR1Q969H4 720 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 MAGEB18Q96M61 343 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 SMC6Q96SB8 1091 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 PXMP2Q9NR77 195 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 RBAKQ9NYW8 714 aaPredicted RBP12.84□□□□□ -0.35
CLIP3-201ENST00000360535 COQ4Q9Y3A0 265 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 CNTNAP1P78357 1384 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 A0A1B0GUA9 196 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 JAK3P52333 1124 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 ORC1Q13415 861 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 TMEM63BQ5T3F8 832 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 CCDC60Q8IWA6 550 aaPredicted RBP12.84□□□□□ -0.35
CLIP3-201ENST00000360535 LRRC8CQ8TDW0 803 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 ATP6V0A4Q9HBG4 840 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 RNF146Q9NTX7 359 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 NOP53Q9NZM5 478 aaKnown RBP12.84□□□□□ -0.35
CLIP3-201ENST00000360535 AGTPBP1Q9UPW5 1226 aa12.84□□□□□ -0.35
CLIP3-201ENST00000360535 NR3C2P08235 984 aa12.83□□□□□ -0.36
CLIP3-201ENST00000360535 BRD2P25440 801 aaKnown RBP12.83□□□□□ -0.36
CLIP3-201ENST00000360535 SSTR1P30872 391 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms