RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 SYCP2LQ5T4T6 812 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 ASIC4Q96FT7 647 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 TASP1Q9H6P5 420 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 MTMR4Q9NYA4 1195 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 LRRIQ3A6PVS8 624 aaPredicted RBP15.56■□□□□ 0.08
CHD4-201ENST00000357008 CTDNEP1O95476 244 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 KRT72Q14CN4 511 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 GALNT4Q8N4A0 578 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 ZNF512BQ96KM6 892 aaPredicted RBP15.56■□□□□ 0.08
CHD4-201ENST00000357008 PLEKHA5Q9HAU0 1116 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 MAGEA13PA6NCF6 341 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 DMC1Q14565 340 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 CASKIN2Q8WXE0 1202 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 NR1H4Q96RI1 486 aaPredicted RBP15.56■□□□□ 0.08
CHD4-201ENST00000357008 NSMCE4AQ9NXX6 385 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 L1RE1Q9UN81 338 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 SGSM1Q2NKQ1 1148 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 BTBD8Q5XKL5 378 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 NUP93Q8N1F7 819 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 KCTD17Q8N5Z5 321 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 TTLL6Q8N841 843 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 CYGBQ8WWM9 190 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 AGAP3Q96P47 875 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 SPON2Q9BUD6 331 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 CD248Q9HCU0 757 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 HERC5Q9UII4 1024 aaKnown RBP15.56■□□□□ 0.08
CHD4-201ENST00000357008 HMOX2P30519 316 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 ATP6V1E1P36543 226 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 GEMIN4P57678 1058 aaKnown RBP15.56■□□□□ 0.08
CHD4-201ENST00000357008 NCOA4Q13772 614 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 RSAD1Q9HA92 442 aa15.56■□□□□ 0.08
CHD4-201ENST00000357008 KPNB1Q14974 876 aaKnown RBP15.55■□□□□ 0.08
CHD4-201ENST00000357008 ZNF677Q86XU0 584 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 RMDN1Q96DB5 314 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 KLF6Q99612 283 aaPredicted RBP15.55■□□□□ 0.08
CHD4-201ENST00000357008 DNAJC7Q99615 494 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 FRMD8Q9BZ67 464 aaPredicted RBP15.55■□□□□ 0.08
CHD4-201ENST00000357008 SATB2Q9UPW6 733 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 PRKCBP05771 671 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 HSPA13P48723 471 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 OLFML2BQ68BL8 750 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 C4orf22Q6V702 233 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 OTUB1Q96FW1 271 aaPredicted RBP15.55■□□□□ 0.08
CHD4-201ENST00000357008 JPH1Q9HDC5 661 aaPredicted RBP15.55■□□□□ 0.08
CHD4-201ENST00000357008 SNRPFP62306 86 aaKnown RBP15.55■□□□□ 0.08
CHD4-201ENST00000357008 DNAJC3Q13217 504 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 CRYMQ14894 314 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 GPR162Q16538 588 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 C6orf10Q5SRN2 563 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 TPCN2Q8NHX9 752 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 PTPRN2Q92932 1015 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 ECE2O60344 883 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 NQO1P15559 274 aaKnown RBP15.55■□□□□ 0.08
CHD4-201ENST00000357008 DDX5P17844 614 aaKnown RBP15.55■□□□□ 0.08
CHD4-201ENST00000357008 PPIL6Q8IXY8 311 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 RNF149Q8NC42 400 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 CDV3Q9UKY7 258 aaKnown RBP15.55■□□□□ 0.08
CHD4-201ENST00000357008 SULT1E1P49888 294 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 STX19Q8N4C7 294 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 AFG1LQ8WV93 481 aa15.55■□□□□ 0.08
CHD4-201ENST00000357008 MAP3K4Q9Y6R4 1608 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 MAPK7Q13164 816 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 AASDHQ4L235 1098 aaPredicted RBP15.54■□□□□ 0.08
CHD4-201ENST00000357008 XKR3Q5GH77 459 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 SPATA18Q8TC71 538 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 VPS33BQ9H267 617 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 ARHGEF38Q9NXL2 777 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 TLR2O60603 784 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 WDR47O94967 919 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 MMP10P09238 476 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 ERVK-24P63145 666 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 COBLL1Q53SF7 1204 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 SLC13A5Q86YT5 568 aaPredicted RBP15.54■□□□□ 0.08
CHD4-201ENST00000357008 SLC10A4Q96EP9 437 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 HIC2Q96JB3 615 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 ZNF668Q96K58 619 aaPredicted RBP15.54■□□□□ 0.08
CHD4-201ENST00000357008 ACOT2P49753 483 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 FXR2P51116 673 aaKnown RBP eCLIP15.54■□□□□ 0.081e-8■■■■■ 27.9
CHD4-201ENST00000357008 USP6NLQ92738 828 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 TMEM8AQ9HCN3 771 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 SEPT3Q9UH03 358 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 POLBP06746 335 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 MRPL28Q13084 256 aaKnown RBP15.54■□□□□ 0.08
CHD4-201ENST00000357008 WLSQ5T9L3 541 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 SPATA33Q96N06 139 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 WRNIP1Q96S55 665 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 GID8Q9NWU2 228 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 AFF4Q9UHB7 1163 aaKnown RBP15.54■□□□□ 0.08
CHD4-201ENST00000357008 E7ENQ6 273 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 TMED10P49755 219 aaKnown RBP15.54■□□□□ 0.08
CHD4-201ENST00000357008 RBP5P82980 135 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 SPP2Q13103 211 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 PDAP1Q13442 181 aaKnown RBP15.54■□□□□ 0.08
CHD4-201ENST00000357008 IFNEQ86WN2 208 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 NDUFA13Q9P0J0 144 aa15.54■□□□□ 0.08
CHD4-201ENST00000357008 RBP3P10745 1247 aa15.53■□□□□ 0.08
CHD4-201ENST00000357008 COPB2P35606 906 aa15.53■□□□□ 0.08
CHD4-201ENST00000357008 COPAP53621 1224 aa15.53■□□□□ 0.08
CHD4-201ENST00000357008 CHI3L2Q15782 390 aa15.53■□□□□ 0.08
CHD4-201ENST00000357008 MAP3K14Q99558 947 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms