RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 EPC2Q52LR7 807 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 C1orf220Q5T0J3 134 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 FYB2Q5VWT5 728 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 TBC1D9BQ66K14 1250 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 KCTD1Q719H9 257 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 ANKS1BQ7Z6G8 1248 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 VPS52Q8N1B4 723 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 ARHGAP18Q8N392 663 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 PDCD7Q8N8D1 485 aaKnown RBP7.19□□□□□ -1.26
VPS39-202ENST00000348544 ERMNQ8TAM6 284 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 GRK7Q8WTQ7 553 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 STMN2Q93045 179 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 MCUR1Q96AQ8 359 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 CFAP57Q96MR6 1250 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 KREMEN1Q96MU8 473 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 NAP1L4Q99733 375 aaKnown RBP7.19□□□□□ -1.26
VPS39-202ENST00000348544 ECSITQ9BQ95 431 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 MMADHCQ9H3L0 296 aaPredicted RBP7.19□□□□□ -1.26
VPS39-202ENST00000348544 ETNK2Q9NVF9 386 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 GALNT8Q9NY28 637 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 FRMD4BQ9Y2L6 1034 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.19□□□□□ -1.26
VPS39-202ENST00000348544 PLIN4Q96Q06 1357 aa7.19□□□□□ -1.26
VPS39-202ENST00000348544 A6NJR5 290 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 TISP43B9A030 160 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 MEIS2O14770 477 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 PIAS1O75925 651 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 USP1O94782 785 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 FDX1P10109 184 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 IMPDH2P12268 514 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 ANPEPP15144 967 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 GAP43P17677 238 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 MAN1A1P33908 653 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 CPA2P48052 419 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 GCLMP48507 274 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 RHBDL3P58872 404 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 GSTO1P78417 241 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 ARHGAP4P98171 946 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 CDC16Q13042 620 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 DPY19L2Q6NUT2 758 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 BRINP3Q76B58 766 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 ZNF720Q7Z2F6 126 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 LRRC6Q86X45 466 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 RBM12BQ8IXT5 1001 aaKnown RBP7.18□□□□□ -1.26
VPS39-202ENST00000348544 FAM71AQ8IYT1 594 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 CCDC24Q8N4L8 307 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 WDR66Q8TBY9 1149 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 PLEKHO2Q8TD55 490 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 DDX27Q96GQ7 796 aaKnown RBP7.18□□□□□ -1.26
VPS39-202ENST00000348544 DYDC2Q96IM9 177 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 GPR101Q96P66 508 aaPredicted RBP7.18□□□□□ -1.26
VPS39-202ENST00000348544 EIF2AK1Q9BQI3 630 aaKnown RBP7.18□□□□□ -1.26
VPS39-202ENST00000348544 TMEM120AQ9BXJ8 343 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 VCX3BQ9H321 246 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 VCX3AQ9NNX9 186 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 ALG13Q9NP73 1137 aaKnown RBP7.18□□□□□ -1.26
VPS39-202ENST00000348544 KCNQ5Q9NR82 932 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 UVRAGQ9P2Y5 699 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 HSFX1Q9UBD0 423 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 DNAJC6O75061 913 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 COQ9O75208 318 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 BANF1O75531 89 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 CALCAP01258 141 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 TROVE2P10155 538 aaKnown RBP eCLIP7.18□□□□□ -1.26
VPS39-202ENST00000348544 RALAP11233 206 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 KRT4P19013 534 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 RAP1GDS1P52306 607 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 USP46P62068 366 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 CDK16Q00536 496 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 DSG1Q02413 1049 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 EFTUD2Q15029 972 aaKnown RBP eCLIP7.18□□□□□ -1.261e-5■□□□□ 8.3
VPS39-202ENST00000348544 ZRSR2Q15696 482 aaKnown RBP7.18□□□□□ -1.26
VPS39-202ENST00000348544 LLGL2Q6P1M3 1020 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 DPP8Q6V1X1 898 aaPredicted RBP7.18□□□□□ -1.26
VPS39-202ENST00000348544 C1orf186Q6ZWK4 172 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 ZNF365Q70YC5 407 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 MARK2Q7KZI7 788 aaKnown RBP7.18□□□□□ -1.26
VPS39-202ENST00000348544 PHLDB2Q86SQ0 1253 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.18□□□□□ -1.26
VPS39-202ENST00000348544 ZSWIM2Q8NEG5 633 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 CYP2W1Q8TAV3 490 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 SHKBP1Q8TBC3 707 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 TTC25Q96NG3 672 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 PLEKHG4BQ96PX9 1271 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 PANX3Q96QZ0 392 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 FHDC1Q9C0D6 1143 aaPredicted RBP7.18□□□□□ -1.26
VPS39-202ENST00000348544 ANKRD2Q9GZV1 360 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 SENP1Q9P0U3 644 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 ARMCX1Q9P291 453 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 SLC17A7Q9P2U7 560 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 TMCO1Q9UM00 188 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 COMMD3-BMI1R4GMX3 469 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 COL24A1Q17RW2 1714 aa7.18□□□□□ -1.26
VPS39-202ENST00000348544 PIK3CDO00329 1044 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 MSH4O15457 936 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 BUD23O43709 281 aaKnown RBP7.17□□□□□ -1.26
VPS39-202ENST00000348544 GRIN3BO60391 1043 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 ZSCAN5DPP0CG00 497 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 BMP3P12645 472 aa7.17□□□□□ -1.26
VPS39-202ENST00000348544 CRABP2P29373 138 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms