RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 FBXO40Q9UH90 709 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 LIN7AO14910 233 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-202ENST00000347401 LBRQ14739 615 aaKnown RBP13.91□□□□□ -0.18
COL6A3-202ENST00000347401 KIAA0825Q8IV33 1275 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 ZFYVE19Q96K21 471 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 MED15Q96RN5 788 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 DTNAQ9Y4J8 743 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 SZRD1Q7Z422 152 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 C20orf96Q9NUD7 363 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-202ENST00000347401 TLR2O60603 784 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 BBOX1O75936 387 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 SRGNP10124 158 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 KIAA1841Q6NSI8 718 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 MICALL2Q8IY33 904 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 CNKSR1Q969H4 720 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 WDR24Q96S15 920 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 ETAA1Q9NY74 926 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 ZSWIM5Q9P217 1185 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 APEX2Q9UBZ4 518 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 RPL26L1Q9UNX3 145 aaKnown RBP13.91□□□□□ -0.18
COL6A3-202ENST00000347401 RNF103O00237 685 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 ATP1A1P05023 1023 aaKnown RBP13.91□□□□□ -0.18
COL6A3-202ENST00000347401 CCT8P50990 548 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 AHI1Q8N157 1196 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 DLG3Q92796 817 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 FAM162AQ96A26 154 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 SP110Q9HB58 689 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 CACNA2D2Q9NY47 1150 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 CCDC195A0A1B0GUA6 201 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 DNALI1O14645 258 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-202ENST00000347401 TMA16Q96EY4 203 aaKnown RBP13.91□□□□□ -0.18
COL6A3-202ENST00000347401 AMACRQ9UHK6 382 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 SORCS3Q9UPU3 1222 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 UNC13BO14795 1591 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 MYO3BQ8WXR4 1341 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 POTECB2RU33 542 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 CAPN1P07384 714 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 GRK2P25098 689 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 EIF3EP60228 445 aaKnown RBP13.9□□□□□ -0.18
COL6A3-202ENST00000347401 MEI1Q5TIA1 1274 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 TMEM179Q6ZVK1 233 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 MYCBPAPQ8TBZ2 947 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 MTERF3Q96E29 417 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 EEF2KMTQ96G04 330 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 SMIM31A0A1B0GVY4 71 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 IFNA14P01570 189 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 GYS2P54840 703 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 C1orf228Q6PIY5 440 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 C7orf31Q8N865 590 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 USE1Q9NZ43 259 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 MAPK1P28482 360 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 HPCAP84074 193 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 SETD9Q8NE22 299 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 TNIP3Q96KP6 325 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 NEO1Q92859 1461 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 USP32Q8NFA0 1604 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 MYH14Q7Z406 1995 aaKnown RBP13.9□□□□□ -0.18
COL6A3-202ENST00000347401 KRT74Q7RTS7 529 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 CMTR1Q8N1G2 835 aaKnown RBP13.9□□□□□ -0.18
COL6A3-202ENST00000347401 ZFP42Q96MM3 310 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 PLEKHF1Q96S99 279 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 TIMM44O43615 452 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 PIK3R1P27986 724 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 TTC27Q6P3X3 843 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 LRRC6Q86X45 466 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 MKNK1Q9BUB5 465 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 BARHL2Q9NY43 387 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 JAG2Q9Y219 1238 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 APRTP07741 180 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 PSMC6P62333 389 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 PTK7Q13308 1070 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 SUPT20HL1Q3ZLR7 823 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 HABP4Q5JVS0 413 aaKnown RBP13.9□□□□□ -0.18
COL6A3-202ENST00000347401 NOP9Q86U38 636 aaKnown RBP13.9□□□□□ -0.18
COL6A3-202ENST00000347401 MSL3Q8N5Y2 521 aaKnown RBP13.9□□□□□ -0.18
COL6A3-202ENST00000347401 CAVIN3Q969G5 261 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 SNAP25P60880 206 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 NYAP1Q6ZVC0 841 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 TRPC4APQ8TEL6 797 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 ZNF560Q96MR9 790 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 C7orf25Q9BPX7 421 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 GOLPH3Q9H4A6 298 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 KRT84Q9NSB2 600 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 DKK3Q9UBP4 350 aa13.9□□□□□ -0.18
COL6A3-202ENST00000347401 XPO7Q9UIA9 1087 aaKnown RBP13.9□□□□□ -0.18
COL6A3-202ENST00000347401 B2RBV5 119 aa13.89□□□□□ -0.19
COL6A3-202ENST00000347401 PDK1Q15118 436 aa13.89□□□□□ -0.19
COL6A3-202ENST00000347401 MAPRE1Q15691 268 aaKnown RBP13.89□□□□□ -0.19
COL6A3-202ENST00000347401 IYDQ6PHW0 289 aa13.89□□□□□ -0.19
COL6A3-202ENST00000347401 OTULINQ96BN8 352 aa13.89□□□□□ -0.19
COL6A3-202ENST00000347401 HINFPQ9BQA5 517 aa13.89□□□□□ -0.19
COL6A3-202ENST00000347401 GLI2P10070 1586 aa13.89□□□□□ -0.19
COL6A3-202ENST00000347401 COG2Q14746 738 aa13.89□□□□□ -0.19
COL6A3-202ENST00000347401 PPIL6Q8IXY8 311 aa13.89□□□□□ -0.19
COL6A3-202ENST00000347401 ZNF496Q96IT1 587 aaPredicted RBP13.89□□□□□ -0.19
COL6A3-202ENST00000347401 BHMT2Q9H2M3 363 aa13.89□□□□□ -0.19
COL6A3-202ENST00000347401 FGFR4P22455 802 aa13.89□□□□□ -0.19
COL6A3-202ENST00000347401 FDFT1P37268 417 aa13.89□□□□□ -0.19
COL6A3-202ENST00000347401 LRRC1Q9BTT6 524 aa13.89□□□□□ -0.19
COL6A3-202ENST00000347401 TIMMDC1Q9NPL8 285 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms