RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ALG13Q9NP73 1137 aaKnown RBP8.9□□□□□ -0.99
HMGB1-203ENST00000341423 TRMT13Q9NUP7 481 aaKnown RBP8.9□□□□□ -0.99
HMGB1-203ENST00000341423 CNOT8Q9UFF9 292 aaKnown RBP8.9□□□□□ -0.99
HMGB1-203ENST00000341423 MRFAP1Q9Y605 127 aa8.9□□□□□ -0.99
HMGB1-203ENST00000341423 NFASCO94856 1347 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 AK9Q5TCS8 1911 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 E5RI56 91 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 K7ELQ4 463 aaPredicted RBP8.89□□□□□ -0.99
HMGB1-203ENST00000341423 KIF5CO60282 957 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 APOA4P06727 396 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 TPH1P17752 444 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 ERICH1Q86X53 443 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 LARP4BQ92615 738 aaKnown RBP8.89□□□□□ -0.99
HMGB1-203ENST00000341423 FAM227BQ96M60 508 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 FDXACB1Q9BRP7 624 aaPredicted RBP8.89□□□□□ -0.99
HMGB1-203ENST00000341423 PRRG4Q9BZD6 226 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 OSBPL2Q9H1P3 480 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 DCTPP1Q9H773 170 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 WDR41Q9HAD4 459 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 ZNF510Q9Y2H8 683 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 A0A1W2PRG0 241 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 GOLGA8IPA6NC78 632 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 GOLGA8JA6NMD2 632 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 M0QYV0 167 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 INPPL1O15357 1258 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 GJB6O95452 261 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 FOXM1Q08050 763 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 CALCOCO2Q13137 446 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 CAMK4Q16566 473 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 TMEM259Q4ZIN3 620 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 CTR9Q6PD62 1173 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 FAM186BQ8IYM0 893 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 SSH3Q8TE77 659 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 MYO1AQ9UBC5 1043 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 ERVW-1Q9UQF0 538 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 COBLO75128 1261 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 RHOCP08134 193 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 HIST1H2AGP0C0S8 130 aaPredicted RBP8.89□□□□□ -0.99
HMGB1-203ENST00000341423 HIST1H2ADP20671 130 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 ALDH3A1P30838 453 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 RPS6KA2Q15349 733 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 PKN3Q6P5Z2 889 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 PTAR1Q7Z6K3 402 aaPredicted RBP8.89□□□□□ -0.99
HMGB1-203ENST00000341423 MCEMP1Q8IX19 187 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 MAIP1Q8WWC4 291 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 LZICQ8WZA0 190 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 REXO5Q96IC2 774 aaKnown RBP8.89□□□□□ -0.99
HMGB1-203ENST00000341423 HIST1H2AHQ96KK5 128 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 HIST1H2AJQ99878 128 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 H2AFJQ9BTM1 129 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 PLEKHA5Q9HAU0 1116 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 LNPEPQ9UIQ6 1025 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 URB1O60287 2271 aaKnown RBP8.89□□□□□ -0.99
HMGB1-203ENST00000341423 OR6C75A6NL08 312 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 TAS2R50P59544 299 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 ADAM9Q13443 819 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 ZNF394Q53GI3 561 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 ANKRD20A8PQ5CZ79 823 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 ZMYM1Q5SVZ6 1142 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 TPGS1Q6ZTW0 290 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 ALYREFQ86V81 257 aaKnown RBP8.89□□□□□ -0.99
HMGB1-203ENST00000341423 CLYBLQ8N0X4 340 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 CYP2W1Q8TAV3 490 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 RUBCNQ92622 972 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 PORCNQ9H237 461 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 DNAJC17Q9NVM6 304 aaKnown RBP8.89□□□□□ -0.99
HMGB1-203ENST00000341423 SELENONQ9NZV5 590 aa8.89□□□□□ -0.99
HMGB1-203ENST00000341423 KIF1BO60333 1816 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 EPHX1P07099 455 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 TBXAS1P24557 533 aaPredicted RBP8.88□□□□□ -0.99
HMGB1-203ENST00000341423 WASP42768 502 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 HECTD3Q5T447 861 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 KCNT2Q6UVM3 1135 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 FRA10AC1Q70Z53 315 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 SMC5Q8IY18 1101 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 GUF1Q8N442 669 aaKnown RBP8.88□□□□□ -0.99
HMGB1-203ENST00000341423 GIMAP4Q9NUV9 329 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 RNASEH2AO75792 299 aaKnown RBP8.88□□□□□ -0.99
HMGB1-203ENST00000341423 KLK3P07288 261 aaPredicted RBP8.88□□□□□ -0.99
HMGB1-203ENST00000341423 EPB42P16452 691 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 SMARCA1P28370 1054 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 CAPZA2P47755 286 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 GAD2Q05329 585 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 KDSRQ06136 332 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 EFEMP1Q12805 493 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 GRIK3Q13003 919 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 E2F4Q16254 413 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 PPP2R5EQ16537 467 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 FBXO43Q4G163 708 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 TMEM35BQ8NCS4 154 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 CDC26Q8NHZ8 85 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 CAPSLQ8WWF8 208 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 SPIRE2Q8WWL2 714 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 VPS39Q96JC1 886 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 ANTXR1Q9H6X2 564 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 COPS7BQ9H9Q2 264 aaPredicted RBP8.88□□□□□ -0.99
HMGB1-203ENST00000341423 DNAJC12Q9UKB3 198 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 ZNF521Q96K83 1311 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 PNMA6EA0A0J9YXQ4 647 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 TRIM66O15016 1216 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms