RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 COILP38432 576 aaPredicted RBP10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 TTC16Q8NEE8 873 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 AENQ8WTP8 325 aaKnown RBP10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 KIAA1257Q9ULG3 409 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 GUCY1A2P33402 732 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 TBX2Q13207 712 aaPredicted RBP10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 PTK7Q13308 1070 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 WASHC2DQ5SRD0 308 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 SLC26A7Q8TE54 656 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 XPO7Q9UIA9 1087 aaKnown RBP10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 SORCS3Q9UPU3 1222 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 M0QYV0 167 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 MYO1DO94832 1006 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 XPAP23025 273 aaPredicted RBP10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 TROAPQ12815 778 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 RABGAP1LQ5R372 815 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 FBXW10Q5XX13 1052 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 LRRC6Q86X45 466 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 PAGR1Q9BTK6 254 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 TBC1D4O60343 1298 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 CYP2C8P10632 490 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 PDK2Q15119 407 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 NPHS2Q9NP85 383 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 HEY1Q9Y5J3 304 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 ACTL7BQ9Y614 415 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 IGF2BP3O00425 579 aaKnown RBP eCLIP10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 DEFA1P59665 94 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 DEFA3P59666 94 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 TRIM65Q6PJ69 517 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 SLC13A5Q86YT5 568 aaPredicted RBP10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 RMDN1Q96DB5 314 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 GTSE1Q9NYZ3 720 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 PDHBP11177 359 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 NAB1Q13506 487 aa10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 PAWRQ96IZ0 340 aaKnown RBP10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 WARS2Q9UGM6 360 aaKnown RBP10.79□□□□□ -0.68
CCDC88A-202ENST00000336838 USP17L10C9JJH3 530 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 F5H6K3 240 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 FOXN1O15353 648 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 SLC16A4O15374 487 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 TDP2O95551 362 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 MYL2P10916 166 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 CASP1P29466 404 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 KLRC3Q07444 240 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 STX5Q13190 355 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 SYCP2LQ5T4T6 812 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 NCLNQ969V3 563 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 LRCH1Q9Y2L9 728 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 ENTPD3O75355 529 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 SARSP49591 514 aaKnown RBP10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 DOK7Q18PE1 504 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 ZFP1Q6P2D0 407 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 EME1Q96AY2 570 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 PGM2Q96G03 612 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 SPDYE16A6NNV3 312 aaPredicted RBP10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 ABLIM1O14639 778 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 NUP107P57740 925 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 NAA30Q147X3 362 aaPredicted RBP10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 SPDYE2Q495Y8 402 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 ZNF746Q6NUN9 644 aaPredicted RBP10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 NLRP9Q7RTR0 991 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 ALG6Q9Y672 507 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 LRRC10BA6NIK2 292 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 EIF2AK2P19525 551 aaKnown RBP10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 PPARDQ03181 441 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 BOLA3Q53S33 107 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 MEI1Q5TIA1 1274 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 C1orf131Q8NDD1 294 aaKnown RBP10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 MCUQ8NE86 351 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 RBM46Q8TBY0 533 aaKnown RBP10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 GRK2P25098 689 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 ACTR2P61160 394 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 MEA1Q16626 185 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 MS4A14Q96JA4 679 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 HEMGNQ9BXL5 484 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 NMT2O60551 498 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 WLSQ5T9L3 541 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 STRIP1Q5VSL9 837 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 C1orf54Q8WWF1 131 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 SAR1AQ9NR31 198 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 SLC29A2Q14542 456 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 VPS11Q9H270 941 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 EPC1Q9H2F5 836 aa10.78□□□□□ -0.68
CCDC88A-202ENST00000336838 S100A5P33763 92 aa10.77□□□□□ -0.68
CCDC88A-202ENST00000336838 RBP5P82980 135 aa10.77□□□□□ -0.68
CCDC88A-202ENST00000336838 ZNF211Q13398 564 aaPredicted RBP10.77□□□□□ -0.68
CCDC88A-202ENST00000336838 ADAMTS13Q76LX8 1427 aa10.77□□□□□ -0.68
CCDC88A-202ENST00000336838 C3orf70A6NLC5 250 aaPredicted RBP10.77□□□□□ -0.68
CCDC88A-202ENST00000336838 PHF20L1A8MW92 1017 aa10.77□□□□□ -0.68
CCDC88A-202ENST00000336838 KRT8P05787 483 aa10.77□□□□□ -0.68
CCDC88A-202ENST00000336838 MYL6P60660 151 aa10.77□□□□□ -0.68
CCDC88A-202ENST00000336838 SPATA18Q8TC71 538 aa10.77□□□□□ -0.68
CCDC88A-202ENST00000336838 NLRP4Q96MN2 994 aa10.77□□□□□ -0.68
CCDC88A-202ENST00000336838 TRIM66O15016 1216 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 NAF1Q96HR8 494 aaKnown RBP10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 ANKZF1Q9H8Y5 726 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 NBPF26B4DH59 902 aa10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 HOXB6P17509 224 aaKnown RBP10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 MAP4P27816 1152 aaKnown RBP10.77□□□□□ -0.69
CCDC88A-202ENST00000336838 NBPF15Q8N660 670 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms