RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 SYDE1Q6ZW31 735 aaPredicted RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 SLAIN1Q8ND83 568 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 LENG9Q96B70 501 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 CNPY3Q9BT09 278 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 NUP85Q9BW27 656 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 CELF4Q9BZC1 486 aaKnown RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 L2HGDHQ9H9P8 463 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 AHCTF1Q8WYP5 2266 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 CUL9Q8IWT3 2517 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 F8VZ95 297 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 KRT38O76015 456 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 RBP3P10745 1247 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 ODC1P11926 461 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 DARSP14868 501 aaKnown RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 YY1P25490 414 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 C10orf67Q8IYJ2 551 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 DNAAF3Q8N9W5 541 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 TTC25Q96NG3 672 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 OSBPL9Q96SU4 736 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 DPH5Q9H2P9 285 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 LSM7Q9UK45 103 aaKnown RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 A0A087X0B3 334 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 PMM2O15305 246 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 CA4P22748 312 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 PON1P27169 355 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 ARL4CP56559 192 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 DHX9Q08211 1270 aaKnown RBP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 IFRD2Q12894 506 aaPredicted RBP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 LY6KQ17RY6 165 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 HHATQ5VTY9 493 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 ALS2CLQ60I27 953 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 TRIM42Q8IWZ5 723 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 ELMOD1Q8N336 334 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 CCDC63Q8NA47 563 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 GPR20Q99678 358 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 EPB41L5Q9HCM4 733 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 BTBD7Q9P203 1132 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 SRRDQ9UH36 339 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 ASS1P00966 412 aaKnown RBP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 GPAT2Q6NUI2 795 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 MMS22LQ6ZRQ5 1243 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 ZDHHC17Q8IUH5 632 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 KIFC3Q9BVG8 833 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 OSBPL8Q9BZF1 889 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 PRDM16Q9HAZ2 1276 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 KCNK9Q9NPC2 374 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 CISHQ9NSE2 258 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 MROH7Q68CQ1 1323 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 BRWD1Q9NSI6 2320 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 CRYBB1P53674 252 aaPredicted RBP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 SLC12A3P55017 1021 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 CDH6P55285 790 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 ARPP19P56211 112 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 YWHAGP61981 247 aaKnown RBP eCLIP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 CAPSQ13938 189 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 ACAP1Q15027 740 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 CEP85LQ5SZL2 805 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 B4GALNT4Q76KP1 1039 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 CDR2LQ86X02 465 aaPredicted RBP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 ZNF606Q8WXB4 792 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 KRT35Q92764 455 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 SENP1Q9P0U3 644 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 BARX2Q9UMQ3 279 aaPredicted RBP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 NOC2LQ9Y3T9 749 aaKnown RBP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 MOCS3O95396 460 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 NPTXRO95502 500 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 CYP11B1P15538 503 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 BMP6P22004 513 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 PDE1BQ01064 536 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 ASPHQ12797 758 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 SPATA2LQ8IUW3 424 aaPredicted RBP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 SH3TC2Q8TF17 1288 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 FRMD8P1Q9BZ68 369 aaPredicted RBP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 CDT1Q9H211 546 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 XPNPEP1Q9NQW7 623 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 EP300Q09472 2414 aaPredicted RBP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 SPEF2Q9C093 1822 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 H7C4K7 107 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 ITGB3P05106 788 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 INHBAP08476 426 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 PPM1AP35813 382 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 GFPT1Q06210 699 aaPredicted RBP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 ZNF268Q14587 947 aaPredicted RBP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 PLCB4Q15147 1175 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 E2F5Q15329 346 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 HEATR6Q6AI08 1181 aaKnown RBP7.25□□□□□ -1.25
SF3B1-201ENST00000335508 CCDC110Q8TBZ0 833 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 EXOC4Q96A65 974 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 MAML3Q96JK9 1138 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 DPP3Q9NY33 737 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 ANAPC5Q9UJX4 755 aa7.25□□□□□ -1.25
SF3B1-201ENST00000335508 TRPM3Q9HCF6 1732 aaPredicted RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 RGPD8O14715 1765 aaPredicted RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 FRMD3A2A2Y4 597 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 TBC1D8O95759 1140 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 COL6A1P12109 1028 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 ZCWPW2Q504Y3 356 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 BSPRYQ5W0U4 402 aa7.24□□□□□ -1.25
SF3B1-201ENST00000335508 DARS2Q6PI48 645 aaKnown RBP7.24□□□□□ -1.25
SF3B1-201ENST00000335508 PCGF5Q86SE9 256 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms