RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 NEU2Q9Y3R4 380 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 HOXB6P17509 224 aaKnown RBP14.92□□□□□ -0.02
COL7A1-201ENST00000328333 RAD23AP54725 363 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 TSNQ15631 228 aaKnown RBP14.92□□□□□ -0.02
COL7A1-201ENST00000328333 INPP5DQ92835 1189 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 NFKBIL1Q9UBC1 381 aaPredicted RBP14.92□□□□□ -0.02
COL7A1-201ENST00000328333 A2ML1A8K2U0 1454 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 TTC26A0AVF1 554 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 ATP1A1P05023 1023 aaKnown RBP14.92□□□□□ -0.02
COL7A1-201ENST00000328333 ENO3P13929 434 aaPredicted RBP14.92□□□□□ -0.02
COL7A1-201ENST00000328333 BNC1Q01954 994 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 CACHD1Q5VU97 1274 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 ELMOD1Q8N336 334 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 C7orf31Q8N865 590 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 BTN2A2Q8WVV5 523 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 OTULINQ96BN8 352 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 ILKAPQ9H0C8 392 aaPredicted RBP14.92□□□□□ -0.02
COL7A1-201ENST00000328333 ICE1Q9Y2F5 2266 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 FRMPD1Q5SYB0 1578 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 GNAT1P11488 350 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 STAT3P40763 770 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 COASYQ13057 564 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 EIF2B5Q13144 721 aaKnown RBP14.92□□□□□ -0.02
COL7A1-201ENST00000328333 PKN3Q6P5Z2 889 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 SERHL2Q9H4I8 314 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 ZCCHC17Q9NP64 241 aaKnown RBP14.92□□□□□ -0.02
COL7A1-201ENST00000328333 SERHLQ9NQF3 203 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 SYDE2Q5VT97 1194 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 DPP10Q8N608 796 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 PCDHB6Q9Y5E3 794 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 PSTPIP1O43586 416 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 KATNA1O75449 491 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 IFNA14P01570 189 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 VAMP7P51809 220 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 DRAP1Q14919 205 aaPredicted RBP14.92□□□□□ -0.02
COL7A1-201ENST00000328333 NOP9Q86U38 636 aaKnown RBP14.92□□□□□ -0.02
COL7A1-201ENST00000328333 EFCAB1Q9HAE3 211 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 HERC5Q9UII4 1024 aaKnown RBP14.92□□□□□ -0.02
COL7A1-201ENST00000328333 APRTP07741 180 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 FAM83EQ2M2I3 478 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 ATAD3BQ5T9A4 648 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 TRIM65Q6PJ69 517 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 CCNI2Q6ZMN8 369 aaPredicted RBP14.92□□□□□ -0.02
COL7A1-201ENST00000328333 ZNF786Q8N393 782 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 ENKURQ8TC29 256 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 PAK5Q9P286 719 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 RC3H1Q5TC82 1133 aaKnown RBP14.92□□□□□ -0.02
COL7A1-201ENST00000328333 C12orf60Q5U649 245 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 PPP2R3CQ969Q6 453 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 WNK4Q96J92 1243 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 STARD13Q9Y3M8 1113 aa14.92□□□□□ -0.02
COL7A1-201ENST00000328333 SNPHO15079 494 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 TSPAN9O75954 239 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 SETD9Q8NE22 299 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 OSBPL10Q9BXB5 764 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.91□□□□□ -0.023e-7■■■■□ 20.6
COL7A1-201ENST00000328333 MAP3K4Q9Y6R4 1608 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 FAM58BPP0C7Q3 252 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 LRRC36Q1X8D7 754 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 ZNF677Q86XU0 584 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 GSPT2Q8IYD1 628 aaKnown RBP14.91□□□□□ -0.02
COL7A1-201ENST00000328333 LRRC59Q96AG4 307 aaKnown RBP14.91□□□□□ -0.02
COL7A1-201ENST00000328333 ACSBG1Q96GR2 724 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 NCKAP5LQ9HCH0 1330 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 ATP10BO94823 1461 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 B2RBV5 119 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 COPB2P35606 906 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 PRCPP42785 496 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 CDH6P55285 790 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 NRDE2Q9H7Z3 1164 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 NDUFB9Q9Y6M9 179 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 BMP3P12645 472 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 STAT5AP42229 794 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 STAT5BP51692 787 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 NLRP9Q7RTR0 991 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 GALNT4Q8N4A0 578 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 ERP44Q9BS26 406 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 AMACRQ9UHK6 382 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 KIAA1210Q9ULL0 1709 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 CYTH3O43739 400 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 UBTFL6P0CB48 400 aaPredicted RBP14.91□□□□□ -0.02
COL7A1-201ENST00000328333 EXOSC4Q9NPD3 245 aaKnown RBP14.91□□□□□ -0.02
COL7A1-201ENST00000328333 KLHL3Q9UH77 587 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 PTPRKQ15262 1439 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 PHF20L1A8MW92 1017 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 PGBD4Q96DM1 585 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 SPRTNQ9H040 489 aaPredicted RBP14.91□□□□□ -0.02
COL7A1-201ENST00000328333 CAAP1Q9H8G2 361 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 ABCB11O95342 1321 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 MAPK6Q16659 721 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 MYCBPAPQ8TBZ2 947 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 ZNF184Q99676 751 aaPredicted RBP14.91□□□□□ -0.02
COL7A1-201ENST00000328333 SMARCAD1Q9H4L7 1026 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 RSAD1Q9HA92 442 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 HSPBP1Q9NZL4 362 aa14.91□□□□□ -0.02
COL7A1-201ENST00000328333 PDXKO00764 312 aa14.9□□□□□ -0.02
COL7A1-201ENST00000328333 MLH1P40692 756 aa14.9□□□□□ -0.02
COL7A1-201ENST00000328333 LRRC41Q15345 812 aa14.9□□□□□ -0.02
COL7A1-201ENST00000328333 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.9□□□□□ -0.02
COL7A1-201ENST00000328333 TLR7Q9NYK1 1049 aaKnown RBP14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms