RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 NRDE2Q9H7Z3 1164 aa16.54■□□□□ 0.24
PDLIM5-202ENST00000318007 ACP6Q9NPH0 428 aa16.54■□□□□ 0.24
PDLIM5-202ENST00000318007 FNDC1Q4ZHG4 1894 aaPredicted RBP16.54■□□□□ 0.24
PDLIM5-202ENST00000318007 LRRC53A6NM62 1247 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 MYOGP15173 224 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 CDC25BP30305 580 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 MCCD1P59942 119 aaPredicted RBP16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 ENPEPQ07075 957 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 MYO1EQ12965 1108 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 ZNF667Q5HYK9 610 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 KREMEN1Q96MU8 473 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 ZNF830Q96NB3 372 aaPredicted RBP16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 TTYH3Q9C0H2 523 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.53■□□□□ 0.243e-6■■□□□ 11.9
PDLIM5-202ENST00000318007 ITIH6Q6UXX5 1313 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 LCHNA4D1U4 455 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 PIRO00625 290 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 HOXA2O43364 376 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 HCRTO43612 131 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 EFCAB14O75071 495 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 KRT5P13647 590 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 KRT9P35527 623 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 TNNC1P63316 161 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 COLGALT2Q8IYK4 626 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 LRRC43Q8N309 656 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 B3GALT6Q96L58 329 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 UBE2OQ9C0C9 1292 aaKnown RBP16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 MTUS1Q9ULD2 1270 aa16.53■□□□□ 0.24
PDLIM5-202ENST00000318007 ANO9A1A5B4 782 aa16.52■□□□□ 0.24
PDLIM5-202ENST00000318007 KPNA7A9QM74 516 aa16.52■□□□□ 0.24
PDLIM5-202ENST00000318007 GJB5O95377 273 aa16.52■□□□□ 0.24
PDLIM5-202ENST00000318007 ASPAP45381 313 aa16.52■□□□□ 0.24
PDLIM5-202ENST00000318007 TAF6P49848 677 aa16.52■□□□□ 0.24
PDLIM5-202ENST00000318007 LILRA4P59901 499 aa16.52■□□□□ 0.24
PDLIM5-202ENST00000318007 DRAP1Q14919 205 aaPredicted RBP16.52■□□□□ 0.24
PDLIM5-202ENST00000318007 E4F1Q66K89 784 aaPredicted RBP16.52■□□□□ 0.24
PDLIM5-202ENST00000318007 PLCB1Q9NQ66 1216 aa16.52■□□□□ 0.24
PDLIM5-202ENST00000318007 KANSL3Q9P2N6 904 aa16.52■□□□□ 0.24
PDLIM5-202ENST00000318007 LUC7L2Q9Y383 392 aaKnown RBP16.52■□□□□ 0.24
PDLIM5-202ENST00000318007 COL4A6Q14031 1691 aa16.52■□□□□ 0.23
PDLIM5-202ENST00000318007 NRP1O14786 923 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 TLL1O43897 1013 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 GFPT2O94808 682 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 TPM1P09493 284 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 CYP3A5P20815 502 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 SSTR3P32745 418 aaPredicted RBP16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 SLC11A1P49279 550 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 CCDC173Q0VFZ6 552 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 CUL2Q13617 745 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 SPRED2Q7Z698 418 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 HERVK_113Q902F9 699 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 PDLIM2Q96JY6 352 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 MRPL9Q9BYD2 267 aaKnown RBP16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 NIF3L1Q9GZT8 377 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 SDCBP2Q9H190 292 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 CEP72Q9P209 647 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 HMGXB4Q9UGU5 601 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 MRPL42Q9Y6G3 142 aaKnown RBP16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 AKR1B15C9JRZ8 316 aaPredicted RBP16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 PMM2O15305 246 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 MFAP3LO75121 409 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 LRPAP1P30533 357 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 DSC1Q08554 894 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 TBX2Q13207 712 aaPredicted RBP16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 DSTYKQ6XUX3 929 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 DPH6Q7L8W6 267 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 HERC6Q8IVU3 1022 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 ZNF560Q96MR9 790 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 XIRP2A4UGR9 3374 aa16.51■□□□□ 0.23
PDLIM5-202ENST00000318007 F8VZ95 297 aa16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 FOXN3O00409 490 aaPredicted RBP16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 SKILP12757 684 aa16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 DEKP35659 375 aaKnown RBP16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 TIGD5Q53EQ6 642 aa16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 TMEM270Q6UE05 265 aa16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 CEP57Q86XR8 500 aa16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 TC2NQ8N9U0 490 aa16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 BCL7CQ8WUZ0 217 aaPredicted RBP16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 BAP1Q92560 729 aa16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 ZNF689Q96CS4 500 aaPredicted RBP16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 MRPL45Q9BRJ2 306 aaKnown RBP16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 NUP58Q9BVL2 599 aa16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 NAA15Q9BXJ9 866 aaKnown RBP16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 GPR88Q9GZN0 384 aa16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 ABHD10Q9NUJ1 306 aa16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 CAPN11Q9UMQ6 739 aa16.5■□□□□ 0.23
PDLIM5-202ENST00000318007 GOLGA6L6A8MZA4 724 aa16.49■□□□□ 0.23
PDLIM5-202ENST00000318007 CYB561D2O14569 222 aa16.49■□□□□ 0.23
PDLIM5-202ENST00000318007 INPPL1O15357 1258 aa16.49■□□□□ 0.23
PDLIM5-202ENST00000318007 TADA2AO75478 443 aa16.49■□□□□ 0.23
PDLIM5-202ENST00000318007 ALDH7A1P49419 539 aaKnown RBP16.49■□□□□ 0.23
PDLIM5-202ENST00000318007 MFAP3P55082 362 aa16.49■□□□□ 0.23
PDLIM5-202ENST00000318007 SV2CQ496J9 727 aa16.49■□□□□ 0.23
PDLIM5-202ENST00000318007 LRRC52Q8N7C0 313 aa16.49■□□□□ 0.23
PDLIM5-202ENST00000318007 ZNF397Q8NF99 534 aaPredicted RBP16.49■□□□□ 0.23
PDLIM5-202ENST00000318007 CWH43Q9H720 699 aa16.49■□□□□ 0.23
PDLIM5-202ENST00000318007 RC3H2Q9HBD1 1191 aaKnown RBP16.49■□□□□ 0.23
PDLIM5-202ENST00000318007 FAN1Q9Y2M0 1017 aa16.49■□□□□ 0.23
PDLIM5-202ENST00000318007 PCDHB4Q9Y5E5 795 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms