RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ARHGEF6Q15052 776 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 EDRF1Q3B7T1 1238 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 MICALL2Q8IY33 904 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 PAWRQ96IZ0 340 aaKnown RBP12.08□□□□□ -0.48
VPS39-201ENST00000318006 CLMNQ96JQ2 1002 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 TEX13BQ9BXU2 312 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 RBAKQ9NYW8 714 aaPredicted RBP12.08□□□□□ -0.48
VPS39-201ENST00000318006 KLHL8Q9P2G9 620 aaPredicted RBP12.08□□□□□ -0.48
VPS39-201ENST00000318006 AGO2Q9UKV8 859 aaKnown RBP12.08□□□□□ -0.48
VPS39-201ENST00000318006 NEU2Q9Y3R4 380 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 GTPBP10A4D1E9 387 aaKnown RBP12.08□□□□□ -0.48
VPS39-201ENST00000318006 ENO3P13929 434 aaPredicted RBP12.08□□□□□ -0.48
VPS39-201ENST00000318006 KLRC1P26715 233 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 TBCCQ15814 346 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 HABP4Q5JVS0 413 aaKnown RBP12.08□□□□□ -0.48
VPS39-201ENST00000318006 STYK1Q6J9G0 422 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 CYFIP1Q7L576 1253 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 CERKQ8TCT0 537 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 ETAA1Q9NY74 926 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 MARCOQ9UEW3 520 aaPredicted RBP12.08□□□□□ -0.48
VPS39-201ENST00000318006 HAO1Q9UJM8 370 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 DTNAQ9Y4J8 743 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 AKAP10O43572 662 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 COPB2P35606 906 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 DEFA1P59665 94 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 DEFA3P59666 94 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 C4orf50Q6ZRC1 276 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 MANSC1Q9H8J5 431 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 KCND2Q9NZV8 630 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 DDX20Q9UHI6 824 aaKnown RBP12.08□□□□□ -0.48
VPS39-201ENST00000318006 UBOX5O94941 541 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 PMLP29590 882 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 GNA15P30679 374 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 BAATQ14032 418 aaPredicted RBP12.07□□□□□ -0.48
VPS39-201ENST00000318006 FOXR1Q6PIV2 292 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 DSTYKQ6XUX3 929 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 C2orf69Q8N8R5 385 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.07□□□□□ -0.48
VPS39-201ENST00000318006 OPTNQ96CV9 577 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 STK33Q9BYT3 514 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 CNOT7Q9UIV1 285 aaKnown RBP12.07□□□□□ -0.48
VPS39-201ENST00000318006 ATP8B3O60423 1300 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 UBE2Q2LH0YL09 131 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 UCHL3P15374 230 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 S100A5P33763 92 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 MAGEA4P43358 317 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 PRPF39Q86UA1 669 aaKnown RBP12.07□□□□□ -0.48
VPS39-201ENST00000318006 PLD3Q8IV08 490 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 SEPT8Q92599 483 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 SYN2Q92777 582 aaPredicted RBP12.07□□□□□ -0.48
VPS39-201ENST00000318006 ERGIC2Q96RQ1 377 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 ADAM33Q9BZ11 813 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 RNF181Q9P0P0 153 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 SLC12A6Q9UHW9 1150 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 DMGDHQ9UI17 866 aaKnown RBP12.07□□□□□ -0.48
VPS39-201ENST00000318006 ADGRB2O60241 1585 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 DGAT1O75907 488 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 CACNA2D1P54289 1103 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 MAP3K7CLP57077 242 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 MIEF2Q96C03 454 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 SPATA33Q96N06 139 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 MMP19Q99542 508 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 AGXT2Q9BYV1 514 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 PHTF1Q9UMS5 762 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 TFR2Q9UP52 801 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 UBE4BO95155 1302 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 NWD1Q149M9 1564 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 UBR1Q8IWV7 1749 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 M0R3G1 203 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 RPA1P27694 616 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 CPA2P48052 419 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 RAP1GDS1P52306 607 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 NLRP9Q7RTR0 991 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 CDKL3Q8IVW4 592 aaPredicted RBP12.07□□□□□ -0.48
VPS39-201ENST00000318006 TTC8Q8TAM2 541 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 MAGEB18Q96M61 343 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 DNAJC7Q99615 494 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 PRPF18Q99633 342 aaKnown RBP12.07□□□□□ -0.48
VPS39-201ENST00000318006 SH3GL2Q99962 352 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 SIKE1Q9BRV8 207 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 MRPL1Q9BYD6 325 aaKnown RBP12.07□□□□□ -0.48
VPS39-201ENST00000318006 GIMAP4Q9NUV9 329 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 BFARQ9NZS9 450 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 KIF17Q9P2E2 1029 aa12.07□□□□□ -0.48
VPS39-201ENST00000318006 BCAR1P56945 870 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 MAP3K10Q02779 954 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 XKR3Q5GH77 459 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 AGR3Q8TD06 166 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 CASP10Q92851 521 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 CAAP1Q9H8G2 361 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 TEKT2Q9UIF3 430 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 LRFN2Q9ULH4 789 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 AP4S1Q9Y587 144 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 PPP1R3GB7ZBB8 358 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 TMEM253P0C7T8 217 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 EFNA5P52803 228 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 AP3M2P53677 418 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 MRPL28Q13084 256 aaKnown RBP12.06□□□□□ -0.48
VPS39-201ENST00000318006 ARL13BQ3SXY8 428 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 LRRN4CLQ8ND94 238 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms