RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 HVCN1Q96D96 273 aa21.18■□□□□ 0.98
LIME1-201ENST00000309546 DNAJC19Q96DA6 116 aa21.18■□□□□ 0.98
LIME1-201ENST00000309546 MCRS1Q96EZ8 462 aa21.18■□□□□ 0.98
LIME1-201ENST00000309546 TSPAN18Q96SJ8 248 aa21.18■□□□□ 0.98
LIME1-201ENST00000309546 RTP3Q9BQQ7 232 aa21.18■□□□□ 0.98
LIME1-201ENST00000309546 TBC1D17Q9HA65 648 aa21.18■□□□□ 0.98
LIME1-201ENST00000309546 SEL1LQ9UBV2 794 aa21.18■□□□□ 0.98
LIME1-201ENST00000309546 AFF4Q9UHB7 1163 aaKnown RBP21.18■□□□□ 0.98
LIME1-201ENST00000309546 PIEZO1Q92508 2521 aa21.17■□□□□ 0.98
LIME1-201ENST00000309546 A0A087X0B3 334 aa21.17■□□□□ 0.98
LIME1-201ENST00000309546 GCNT3O95395 438 aa21.17■□□□□ 0.98
LIME1-201ENST00000309546 ADRB2P07550 413 aa21.17■□□□□ 0.98
LIME1-201ENST00000309546 OR4Q2P0C623 313 aa21.17■□□□□ 0.98
LIME1-201ENST00000309546 CEBPBP17676 345 aa21.17■□□□□ 0.98
LIME1-201ENST00000309546 GAP43P17677 238 aa21.17■□□□□ 0.98
LIME1-201ENST00000309546 AARSP49588 968 aaKnown RBP eCLIP21.17■□□□□ 0.98
LIME1-201ENST00000309546 TWF1Q12792 350 aa21.17■□□□□ 0.98
LIME1-201ENST00000309546 FOXD4L5Q5VV16 416 aaPredicted RBP21.17■□□□□ 0.98
LIME1-201ENST00000309546 ELMOD1Q8N336 334 aa21.17■□□□□ 0.98
LIME1-201ENST00000309546 FOXD4L4Q8WXT5 416 aaPredicted RBP21.17■□□□□ 0.98
LIME1-201ENST00000309546 PGLYRP2Q96PD5 576 aa21.17■□□□□ 0.98
LIME1-201ENST00000309546 SLC2A4RGQ9NR83 387 aa21.17■□□□□ 0.98
LIME1-201ENST00000309546 EXOC7Q9UPT5 735 aa21.17■□□□□ 0.98
LIME1-201ENST00000309546 SCN1AP35498 2009 aa21.17■□□□□ 0.98
LIME1-201ENST00000309546 PPP1R37O75864 691 aa21.16■□□□□ 0.98
LIME1-201ENST00000309546 NASPP49321 788 aaPredicted RBP21.16■□□□□ 0.98
LIME1-201ENST00000309546 GPC5P78333 572 aa21.16■□□□□ 0.98
LIME1-201ENST00000309546 C9orf57Q5W0N0 161 aa21.16■□□□□ 0.98
LIME1-201ENST00000309546 PDZD4Q76G19 769 aaPredicted RBP21.16■□□□□ 0.98
LIME1-201ENST00000309546 HSCBQ8IWL3 235 aa21.16■□□□□ 0.98
LIME1-201ENST00000309546 DERAQ9Y315 318 aa21.16■□□□□ 0.98
LIME1-201ENST00000309546 STYXL1Q9Y6J8 313 aa21.16■□□□□ 0.98
LIME1-201ENST00000309546 MORC2Q9Y6X9 1032 aaPredicted RBP21.16■□□□□ 0.98
LIME1-201ENST00000309546 OAZ2O95190 189 aa21.15■□□□□ 0.98
LIME1-201ENST00000309546 HSP90AA1P07900 732 aaKnown RBP21.15■□□□□ 0.98
LIME1-201ENST00000309546 ODC1P11926 461 aa21.15■□□□□ 0.98
LIME1-201ENST00000309546 LILRA4P59901 499 aa21.15■□□□□ 0.98
LIME1-201ENST00000309546 KCNA1Q09470 495 aa21.15■□□□□ 0.98
LIME1-201ENST00000309546 L1TD1Q5T7N2 865 aaKnown RBP21.15■□□□□ 0.98
LIME1-201ENST00000309546 OVOS1Q6IE37 1185 aa21.15■□□□□ 0.98
LIME1-201ENST00000309546 IQCEQ6IPM2 695 aa21.15■□□□□ 0.98
LIME1-201ENST00000309546 CCDC105Q8IYK2 499 aa21.15■□□□□ 0.98
LIME1-201ENST00000309546 LINC00301Q8NCQ3 95 aa21.15■□□□□ 0.98
LIME1-201ENST00000309546 TCEAL4Q96EI5 215 aa21.15■□□□□ 0.98
LIME1-201ENST00000309546 SENP8Q96LD8 212 aa21.15■□□□□ 0.98
LIME1-201ENST00000309546 ZNF512Q96ME7 567 aaPredicted RBP21.15■□□□□ 0.98
LIME1-201ENST00000309546 ZNF396Q96N95 335 aaPredicted RBP21.15■□□□□ 0.98
LIME1-201ENST00000309546 ACCSQ96QU6 501 aa21.15■□□□□ 0.98
LIME1-201ENST00000309546 ASB7Q9H672 318 aa21.15■□□□□ 0.98
LIME1-201ENST00000309546 TFIP11Q9UBB9 837 aaKnown RBP21.15■□□□□ 0.98
LIME1-201ENST00000309546 COL4A3Q01955 1670 aa21.15■□□□□ 0.98
LIME1-201ENST00000309546 OR6C75A6NL08 312 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 SPTLC1O15269 473 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 SPTLC2O15270 562 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 TYMPP19971 482 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 CASP5P51878 434 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 POSTNQ15063 836 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 PRSS36Q5K4E3 855 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 CYP4A22Q5TCH4 519 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 HS6ST3Q8IZP7 471 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 SYCP3Q8IZU3 236 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 SNX21Q969T3 373 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 SAAL1Q96ER3 474 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 OXCT2Q9BYC2 517 aaPredicted RBP21.14■□□□□ 0.97
LIME1-201ENST00000309546 AVENQ9NQS1 362 aaPredicted RBP21.14■□□□□ 0.97
LIME1-201ENST00000309546 PANK4Q9NVE7 773 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 GDE1Q9NZC3 331 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 C2CD2Q9Y426 696 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 YIPF1Q9Y548 306 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 CACNA1HO95180 2353 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 MIA3Q5JRA6 1907 aa21.14■□□□□ 0.97
LIME1-201ENST00000309546 PIRO00625 290 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 ZNF197O14709 1029 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 MYL4P12829 197 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 ADSSP30520 456 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 FOXD4L6Q3SYB3 417 aaPredicted RBP21.13■□□□□ 0.97
LIME1-201ENST00000309546 CRELD2Q6UXH1 353 aaPredicted RBP21.13■□□□□ 0.97
LIME1-201ENST00000309546 FOXD4L3Q6VB84 417 aaPredicted RBP21.13■□□□□ 0.97
LIME1-201ENST00000309546 EFCAB13Q8IY85 973 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 DTWD2Q8NBA8 298 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 NOC3LQ8WTT2 800 aaKnown RBP21.13■□□□□ 0.97
LIME1-201ENST00000309546 FAM213AQ9BRX8 229 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 STRA6Q9BX79 667 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 FGFBP2Q9BYJ0 223 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 ASAH2Q9NR71 780 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 OLFML3Q9NRN5 406 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 DPP3Q9NY33 737 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 CEP72Q9P209 647 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 MAFFQ9ULX9 164 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 PCDHB13Q9Y5F0 798 aa21.13■□□□□ 0.97
LIME1-201ENST00000309546 ANO9A1A5B4 782 aa21.12■□□□□ 0.97
LIME1-201ENST00000309546 VNN2O95498 520 aa21.12■□□□□ 0.97
LIME1-201ENST00000309546 CCR2P41597 374 aa21.12■□□□□ 0.97
LIME1-201ENST00000309546 SNW1Q13573 536 aaKnown RBP21.12■□□□□ 0.97
LIME1-201ENST00000309546 ARMCX5Q6P1M9 558 aa21.12■□□□□ 0.97
LIME1-201ENST00000309546 POTEHQ6S545 545 aa21.12■□□□□ 0.97
LIME1-201ENST00000309546 CCDC65Q8IXS2 484 aa21.12■□□□□ 0.97
LIME1-201ENST00000309546 TMEM209Q96SK2 561 aa21.12■□□□□ 0.97
LIME1-201ENST00000309546 PYM1Q9BRP8 204 aaKnown RBP21.12■□□□□ 0.97
LIME1-201ENST00000309546 FOXQ1Q9C009 403 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms