RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 ESYT2A0FGR8 921 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 TBCAO75347 108 aaKnown RBP14.26□□□□□ -0.13
SKA3-201ENST00000298260 SORBS2O94875 1100 aaKnown RBP14.26□□□□□ -0.13
SKA3-201ENST00000298260 ENO1P06733 434 aaKnown RBP14.26□□□□□ -0.13
SKA3-201ENST00000298260 IMPDH2P12268 514 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 ANPEPP15144 967 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 KDSRQ06136 332 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 CDC16Q13042 620 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 HYIQ5T013 277 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 LPCAT4Q643R3 524 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 GSTA5Q7RTV2 222 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 ECSITQ9BQ95 431 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 TMEM120AQ9BXJ8 343 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 NMUR2Q9GZQ4 415 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 FAM192AQ9GZU8 254 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 KIF13BQ9NQT8 1826 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 B2RBV5 119 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 CHMP2AO43633 222 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 RALAP11233 206 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 BMP3P12645 472 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 CDK7P50613 346 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 KIF22Q14807 665 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 ACBD5Q5T8D3 534 aaPredicted RBP14.26□□□□□ -0.13
SKA3-201ENST00000298260 RIPOR1Q6ZS17 1223 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 TRMT1LQ7Z2T5 733 aaKnown RBP14.26□□□□□ -0.13
SKA3-201ENST00000298260 USP6NLQ92738 828 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 DCLK3Q9C098 648 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 ZNF395Q9H8N7 513 aaPredicted RBP14.26□□□□□ -0.13
SKA3-201ENST00000298260 BLOC1S6Q9UL45 172 aa14.26□□□□□ -0.13
SKA3-201ENST00000298260 FAM237BA0A1B0GVD1 139 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 SPDYE16A6NNV3 312 aaPredicted RBP14.25□□□□□ -0.13
SKA3-201ENST00000298260 FSCN2O14926 492 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 DSG1Q02413 1049 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 PTK6Q13882 451 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 STAT4Q14765 748 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 FYB2Q5VWT5 728 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 ZNF365Q70YC5 407 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 SYT2Q8N9I0 419 aaPredicted RBP14.25□□□□□ -0.13
SKA3-201ENST00000298260 HIPK4Q8NE63 616 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 PYDC1Q8WXC3 89 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 RBM17Q96I25 401 aaKnown RBP14.25□□□□□ -0.13
SKA3-201ENST00000298260 PANX3Q96QZ0 392 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 ZNF232Q9UNY5 417 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 WNK3Q9BYP7 1800 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 UMODL1Q5DID0 1318 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 EMSYQ7Z589 1322 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 E5RJQ4 531 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 GGPS1O95749 300 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 GAS8O95995 478 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 MARK2Q7KZI7 788 aaKnown RBP14.25□□□□□ -0.13
SKA3-201ENST00000298260 TREML1Q86YW5 311 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 ZBED8Q8IZ13 594 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 LMO3Q8TAP4 145 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 TCP10LQ8TDR4 215 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 NAT14Q8WUY8 206 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 THTPAQ9BU02 230 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 KCNK13Q9HB14 408 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 ARHGEF4Q9NR80 690 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 STK32BQ9NY57 414 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 ANKFY1Q9P2R3 1169 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 ANAPC7Q9UJX3 599 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 PCDHGA4Q9Y5G9 962 aa14.25□□□□□ -0.13
SKA3-201ENST00000298260 MYOCOSA0A1B0GUC4 107 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 MEI4A8MW99 385 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 TYROBPO43914 113 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 ZNF862O60290 1169 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 TCEA3O75764 348 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 CAMTA2O94983 1202 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 VAV1P15498 845 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 RXRBP28702 533 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 ARFIP2P53365 341 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 PPP3CAQ08209 521 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 KAZNQ674X7 775 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 PAOXQ6QHF9 649 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 EFCAB3Q8N7B9 438 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 C12orf50Q8NA57 414 aaPredicted RBP14.24□□□□□ -0.13
SKA3-201ENST00000298260 HAUS1Q96CS2 278 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 PHACTR1Q9C0D0 580 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 C10orf88Q9H8K7 445 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 GTPBP10A4D1E9 387 aaKnown RBP14.24□□□□□ -0.13
SKA3-201ENST00000298260 CCDC160A6NGH7 325 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 TTC36A6NLP5 189 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 EML1O00423 815 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 TXNDC9O14530 226 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 SLC16A3O15427 465 aaKnown RBP14.24□□□□□ -0.13
SKA3-201ENST00000298260 LDHBP07195 334 aaKnown RBP14.24□□□□□ -0.13
SKA3-201ENST00000298260 CD58P19256 250 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 HIRAP54198 1017 aaPredicted RBP14.24□□□□□ -0.13
SKA3-201ENST00000298260 SPIRE1Q08AE8 756 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 LCA5Q86VQ0 697 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 NEDD1Q8NHV4 660 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 DHX38Q92620 1227 aaKnown RBP14.24□□□□□ -0.13
SKA3-201ENST00000298260 HAPLN3Q96S86 360 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 SAR1AQ9NR31 198 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 ZNF212Q9UDV6 495 aa14.24□□□□□ -0.13
SKA3-201ENST00000298260 PI4K2BG5E9Z4 385 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 ITGA2BP08514 1039 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 TROVE2P10155 538 aaKnown RBP eCLIP14.23□□□□□ -0.13
SKA3-201ENST00000298260 ARL4CP56559 192 aa14.23□□□□□ -0.13
SKA3-201ENST00000298260 ORC2Q13416 577 aaPredicted RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms