RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 CALR3Q96L12 384 aaKnown RBP12.23□□□□□ -0.45
CUX1-202ENST00000292538 WNT8AQ9H1J5 351 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 VIPAS39Q9H9C1 493 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.23□□□□□ -0.45
CUX1-202ENST00000292538 UVRAGQ9P2Y5 699 aa12.23□□□□□ -0.45
CUX1-202ENST00000292538 CES2O00748 559 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 ASS1P00966 412 aaKnown RBP12.22□□□□□ -0.45
CUX1-202ENST00000292538 HOXC6P09630 235 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 RARAP10276 462 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 ARF4P18085 180 aaPredicted RBP12.22□□□□□ -0.45
CUX1-202ENST00000292538 PEX5P50542 639 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 ACVR2BQ13705 512 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 GLRA4Q5JXX5 417 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 PRELID2Q8N945 189 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 TFAP2BQ92481 460 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 MAML3Q96JK9 1138 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 MCEEQ96PE7 176 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 NIF3L1Q9GZT8 377 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 IGKV6-21A0A0C4DH24 114 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 ADCY6O43306 1168 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 FAM189A1O60320 539 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 GRIK4Q16099 956 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 CDCA2Q69YH5 1023 aaPredicted RBP12.22□□□□□ -0.45
CUX1-202ENST00000292538 TTC27Q6P3X3 843 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 TSHZ1Q6ZSZ6 1077 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 JAMLQ86YT9 394 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 FAM76AQ8TAV0 307 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 HAUS1Q96CS2 278 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 FZD8Q9H461 694 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 SMYD3Q9H7B4 428 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 TJP2Q9UDY2 1190 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 MTUS1Q9ULD2 1270 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 DIS3Q9Y2L1 958 aaKnown RBP12.22□□□□□ -0.45
CUX1-202ENST00000292538 SBF1O95248 1867 aa12.22□□□□□ -0.45
CUX1-202ENST00000292538 CCDC66A2RUB6 948 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 TCF4P15884 667 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 ATF7P17544 494 aaPredicted RBP12.21□□□□□ -0.45
CUX1-202ENST00000292538 SLC26A2P50443 739 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 ZNF157P51786 506 aaPredicted RBP12.21□□□□□ -0.45
CUX1-202ENST00000292538 NOMO3P69849 1222 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 MAMLD1Q13495 774 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 SGO2Q562F6 1265 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 PLEKHH3Q7Z736 793 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 SESTD1Q86VW0 696 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 EXOC8Q8IYI6 725 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 PPTC7Q8NI37 304 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 RPS6KC1Q96S38 1066 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 TINF2Q9BSI4 451 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 C16orf70Q9BSU1 422 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 AGAP1Q9UPQ3 857 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 ZC3H4Q9UPT8 1303 aaKnown RBP12.21□□□□□ -0.45
CUX1-202ENST00000292538 TLDC2A0PJX2 215 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 GAS2O43903 313 aaKnown RBP12.21□□□□□ -0.45
CUX1-202ENST00000292538 ZEB2O60315 1214 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 POLR2BP30876 1174 aaKnown RBP12.21□□□□□ -0.45
CUX1-202ENST00000292538 HSD17B3P37058 310 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 BEX3Q00994 111 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 TNFAIP2Q03169 654 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 IFFO1Q0D2I5 559 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 NNTQ13423 1086 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 CCL14Q16627 93 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 ZNF667Q5HYK9 610 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 SPRYD7Q5W111 196 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 MTHFD1LQ6UB35 978 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 PRUNE1Q86TP1 453 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 SLC13A5Q86YT5 568 aaPredicted RBP12.21□□□□□ -0.45
CUX1-202ENST00000292538 PARK7Q99497 189 aaKnown RBP12.21□□□□□ -0.45
CUX1-202ENST00000292538 OSMRQ99650 979 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 CXCL16Q9H2A7 254 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 SLITRK6Q9H5Y7 841 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 HMGXB4Q9UGU5 601 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 PCDHA3Q9Y5H8 950 aa12.21□□□□□ -0.45
CUX1-202ENST00000292538 OPA1O60313 960 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 PPFIA4O75335 1185 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 KRT10P13645 584 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 TAS2R40P59535 323 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 ZNF200P98182 395 aaPredicted RBP12.21□□□□□ -0.46
CUX1-202ENST00000292538 FAM182AQ5T1J6 154 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 MAMDC4Q6UXC1 1216 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 PAXIP1Q6ZW49 1069 aaPredicted RBP12.21□□□□□ -0.46
CUX1-202ENST00000292538 MON1BQ7L1V2 547 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 C1orf127Q8N9H9 656 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 SHCBP1Q8NEM2 672 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 WHAMMQ8TF30 809 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 CAVIN3Q969G5 261 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 HEXIM2Q96MH2 286 aaKnown RBP12.21□□□□□ -0.46
CUX1-202ENST00000292538 FMO2Q99518 471 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 MAF1Q9H063 256 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 CDHR5Q9HBB8 845 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 VTA1Q9NP79 307 aa12.21□□□□□ -0.46
CUX1-202ENST00000292538 PRMT7Q9NVM4 692 aaPredicted RBP12.21□□□□□ -0.46
CUX1-202ENST00000292538 GOLGA6L10A6NI86 522 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 F8VP50 259 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 ABLIM1O14639 778 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 STRNO43815 780 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 RALAP11233 206 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 PSMC4P43686 418 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 CUL1Q13616 776 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 AMHR2Q16671 573 aa12.2□□□□□ -0.46
CUX1-202ENST00000292538 DGKDQ16760 1214 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms