RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 CHCHD3Q9NX63 227 aaKnown RBP12.03□□□□□ -0.48
USP53-201ENST00000274030 ENTPD3O75355 529 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 PLEKP08567 350 aaPredicted RBP12.02□□□□□ -0.48
USP53-201ENST00000274030 CYP2C9P11712 490 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 BLVRAP53004 296 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 LRRC74AQ0VAA2 488 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 CCDC33Q8N5R6 958 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 DEFB129Q9H1M3 183 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 MRPL40Q9NQ50 206 aaKnown RBP12.02□□□□□ -0.48
USP53-201ENST00000274030 ARHGEF38Q9NXL2 777 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 PRRG1O14668 218 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 ANGPT2O15123 496 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 CYBBP04839 570 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 HIC1Q14526 733 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 TEDDM1Q5T9Z0 273 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 MTHFD1LQ6UB35 978 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 MED15Q96RN5 788 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 C20orf96Q9NUD7 363 aaPredicted RBP12.02□□□□□ -0.48
USP53-201ENST00000274030 KCNH4Q9UQ05 1017 aa12.02□□□□□ -0.48
USP53-201ENST00000274030 C19orf81C9J6K1 198 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 SLC37A4O43826 429 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 RPS6P62753 249 aaKnown RBP12.02□□□□□ -0.49
USP53-201ENST00000274030 STX3Q13277 289 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 HHIPL2Q6UWX4 724 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 JAMLQ86YT9 394 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 YAF2Q8IY57 180 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 FAM151AQ8WW52 585 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 METTL5Q9NRN9 209 aaKnown RBP12.02□□□□□ -0.49
USP53-201ENST00000274030 hCG_2014768A0A024R1R8 64 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 NDUFS3O75489 264 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 PIGHQ14442 188 aaPredicted RBP12.02□□□□□ -0.49
USP53-201ENST00000274030 LRRC23Q53EV4 343 aaPredicted RBP12.02□□□□□ -0.49
USP53-201ENST00000274030 CCNI2Q6ZMN8 369 aaPredicted RBP12.02□□□□□ -0.49
USP53-201ENST00000274030 NOA1Q8NC60 698 aaKnown RBP12.02□□□□□ -0.49
USP53-201ENST00000274030 TIPINQ9BVW5 301 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 SLC7A5P2Q9GIP4 190 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 EML4Q9HC35 981 aaKnown RBP12.02□□□□□ -0.49
USP53-201ENST00000274030 GPRC5CQ9NQ84 441 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 WDR35Q9P2L0 1181 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 TUBE1Q9UJT0 475 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 PCDHB2Q9Y5E7 798 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 C2CD2LO14523 706 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 TBX3O15119 743 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 ITGA4P13612 1032 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 ZNF200P98182 395 aaPredicted RBP12.02□□□□□ -0.49
USP53-201ENST00000274030 SEMA3FQ13275 785 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 SNAPC2Q13487 334 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 FAXCQ5TGI0 409 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 ZKSCAN4Q969J2 545 aaPredicted RBP12.02□□□□□ -0.49
USP53-201ENST00000274030 TRIM62Q9BVG3 475 aa12.02□□□□□ -0.49
USP53-201ENST00000274030 PRG3Q9Y2Y8 225 aaPredicted RBP12.02□□□□□ -0.49
USP53-201ENST00000274030 CDH16O75309 829 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 ITIH2P19823 946 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 RPA1P27694 616 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 PTK7Q13308 1070 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 IER5Q5VY09 327 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 GRAMD4Q6IC98 578 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 CLEC17AQ6ZS10 378 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 FAM71DQ8N9W8 422 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 CCT8L2Q96SF2 557 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 MORC2Q9Y6X9 1032 aaPredicted RBP12.01□□□□□ -0.49
USP53-201ENST00000274030 USP42Q9H9J4 1324 aaKnown RBP12.01□□□□□ -0.49
USP53-201ENST00000274030 RSPH10B2B2RC85 870 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 KIAA0391O15091 583 aaKnown RBP12.01□□□□□ -0.49
USP53-201ENST00000274030 NPTXRO95502 500 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 AGTP01019 485 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 RSPH10BP0C881 870 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 RBP3P10745 1247 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 CYP2C19P33261 490 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 CSE1LP55060 971 aaKnown RBP12.01□□□□□ -0.49
USP53-201ENST00000274030 GOLGA7BQ2TAP0 167 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 GNASQ5JWF2 1037 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 FBXO33Q7Z6M2 555 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 L3MBTL3Q96JM7 780 aaPredicted RBP12.01□□□□□ -0.49
USP53-201ENST00000274030 SYNDIG1Q9H7V2 258 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 MYOZ2Q9NPC6 264 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 ALKQ9UM73 1620 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 ADGRA2Q96PE1 1338 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 HIST1H2AGP0C0S8 130 aaPredicted RBP12.01□□□□□ -0.49
USP53-201ENST00000274030 HIST1H2ADP20671 130 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 CASP4P49662 377 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 ITGA8P53708 1063 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 SYTL3Q4VX76 610 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 SGO1Q5FBB7 561 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 HIST1H2AHQ96KK5 128 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 HIST1H2AJQ99878 128 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 H2AFJQ9BTM1 129 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 NEUROG2Q9H2A3 272 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 ADNPQ9H2P0 1102 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 SENP1Q9P0U3 644 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 NAGPAQ9UK23 515 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 CLCA2Q9UQC9 943 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 ARL2BPQ9Y2Y0 163 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 SLC30A1Q9Y6M5 507 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 GLI2P10070 1586 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 DGKIO75912 1065 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 ITGB3P05106 788 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 NCAM1P13591 858 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 IL10P22301 178 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 MAP4P27816 1152 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms