RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 SOCS4Q8WXH5 440 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 FAXDC2Q96IV6 333 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 BCO2Q9BYV7 579 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 PCDHA3Q9Y5H8 950 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 SMIM35A0A1B0GVV1 85 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 BHMG1C9JSJ3 638 aaPredicted RBP17.73■□□□□ 0.43
CCDC40-201ENST00000269318 SART1O43290 800 aaKnown RBP17.73■□□□□ 0.43
CCDC40-201ENST00000269318 FGFR4P22455 802 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 SSTR3P32745 418 aaPredicted RBP17.73■□□□□ 0.43
CCDC40-201ENST00000269318 GUCY2DQ02846 1103 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 C2CD6Q53TS8 623 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 PPP1R2P3Q6NXS1 205 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 LLGL2Q6P1M3 1020 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 TMEM130Q8N3G9 435 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 PPP1R13LQ8WUF5 828 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 TRIM7Q9C029 511 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 FAM49AQ9H0Q0 323 aaPredicted RBP17.73■□□□□ 0.43
CCDC40-201ENST00000269318 DDX47Q9H0S4 455 aaKnown RBP17.73■□□□□ 0.43
CCDC40-201ENST00000269318 ZFYVE28Q9HCC9 887 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 EPB41L5Q9HCM4 733 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 ANAPC7Q9UJX3 599 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 POLIQ9UNA4 740 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 Q9Y3F1 56 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 NR2E1Q9Y466 385 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 KAT6AQ92794 2004 aa17.73■□□□□ 0.43
CCDC40-201ENST00000269318 CCDC66A2RUB6 948 aa17.72■□□□□ 0.43
CCDC40-201ENST00000269318 HOXA11P31270 313 aaPredicted RBP17.72■□□□□ 0.43
CCDC40-201ENST00000269318 CDC42EP1Q00587 391 aa17.72■□□□□ 0.43
CCDC40-201ENST00000269318 C1QBPQ07021 282 aaKnown RBP17.72■□□□□ 0.43
CCDC40-201ENST00000269318 CRHR2Q13324 411 aa17.72■□□□□ 0.43
CCDC40-201ENST00000269318 CLUL1Q15846 466 aa17.72■□□□□ 0.43
CCDC40-201ENST00000269318 SCARA5Q6ZMJ2 495 aa17.72■□□□□ 0.43
CCDC40-201ENST00000269318 NAP1L3Q99457 506 aaPredicted RBP17.72■□□□□ 0.43
CCDC40-201ENST00000269318 C11orf70Q9BRQ4 267 aa17.72■□□□□ 0.43
CCDC40-201ENST00000269318 SLITRK6Q9H5Y7 841 aa17.72■□□□□ 0.43
CCDC40-201ENST00000269318 VRTNQ9H8Y1 702 aa17.72■□□□□ 0.43
CCDC40-201ENST00000269318 CDHR5Q9HBB8 845 aa17.72■□□□□ 0.43
CCDC40-201ENST00000269318 ADAM22Q9P0K1 906 aa17.72■□□□□ 0.43
CCDC40-201ENST00000269318 SPOPO43791 374 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 ITGB3P05106 788 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 KRT19P08727 400 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 CTGFP29279 349 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 GRM5P41594 1212 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 TNNT3P45378 269 aaPredicted RBP17.71■□□□□ 0.43
CCDC40-201ENST00000269318 PSEN2P49810 448 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 CPT1AP50416 773 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 EPHB4P54760 987 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 TMEM62Q0P6H9 643 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 PLEKHA7Q6IQ23 1121 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 AADACL2Q6P093 401 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 RUFY4Q6ZNE9 571 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 CASKIN2Q8WXE0 1202 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 GDAP1L1Q96MZ0 367 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 ADPGKQ9BRR6 497 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 GCOM2Q9BZD3 368 aaPredicted RBP17.71■□□□□ 0.43
CCDC40-201ENST00000269318 PLEKHA4Q9H4M7 779 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 NXF1Q9UBU9 619 aaKnown RBP17.71■□□□□ 0.43
CCDC40-201ENST00000269318 C2CD2Q9Y426 696 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 ESYT3A0FGR9 886 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 LSM8O95777 96 aaKnown RBP17.71■□□□□ 0.43
CCDC40-201ENST00000269318 CYP2C9P11712 490 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 MMP8P22894 467 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 BRD2P25440 801 aaKnown RBP17.71■□□□□ 0.43
CCDC40-201ENST00000269318 ATICP31939 592 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 CARSP49589 748 aaKnown RBP17.71■□□□□ 0.43
CCDC40-201ENST00000269318 YWHAEP62258 255 aaKnown RBP17.71■□□□□ 0.43
CCDC40-201ENST00000269318 MAMLD1Q13495 774 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 WDR72Q3MJ13 1102 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 DCAF4L1Q3SXM0 396 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 ZNF394Q53GI3 561 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 ZNF667Q5HYK9 610 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 LIN9Q5TKA1 542 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 EMBQ6PCB8 327 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 MMS22LQ6ZRQ5 1243 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 PHLDB2Q86SQ0 1253 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 TFAP2BQ92481 460 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 CAVIN3Q969G5 261 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 ACAP3Q96P50 834 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 HPCAL4Q9UM19 191 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 PCDHGC3Q9UN70 934 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 TLL2Q9Y6L7 1015 aa17.71■□□□□ 0.43
CCDC40-201ENST00000269318 H3BQF6 201 aa17.7■□□□□ 0.42
CCDC40-201ENST00000269318 TNPO2O14787 897 aaKnown RBP17.7■□□□□ 0.42
CCDC40-201ENST00000269318 PYGMP11217 842 aa17.7■□□□□ 0.42
CCDC40-201ENST00000269318 CDH5P33151 784 aaPredicted RBP17.7■□□□□ 0.42
CCDC40-201ENST00000269318 TMEM132DQ14C87 1099 aa17.7■□□□□ 0.42
CCDC40-201ENST00000269318 SDCBP2Q9H190 292 aa17.7■□□□□ 0.42
CCDC40-201ENST00000269318 DARSP14868 501 aaKnown RBP17.7■□□□□ 0.42
CCDC40-201ENST00000269318 OAS2P29728 719 aaKnown RBP17.7■□□□□ 0.42
CCDC40-201ENST00000269318 SLC1A1P43005 524 aa17.7■□□□□ 0.42
CCDC40-201ENST00000269318 RAP1GAPP47736 663 aa17.7■□□□□ 0.42
CCDC40-201ENST00000269318 BEX3Q00994 111 aa17.7■□□□□ 0.42
CCDC40-201ENST00000269318 SREBF2Q12772 1141 aa17.7■□□□□ 0.42
CCDC40-201ENST00000269318 PCBP1Q15365 356 aaKnown RBP eCLIP17.7■□□□□ 0.42
CCDC40-201ENST00000269318 TRADDQ15628 312 aa17.7■□□□□ 0.42
CCDC40-201ENST00000269318 NT5DC4Q86YG4 428 aa17.7■□□□□ 0.42
CCDC40-201ENST00000269318 OSMRQ99650 979 aa17.7■□□□□ 0.42
CCDC40-201ENST00000269318 AP5M1Q9H0R1 490 aa17.7■□□□□ 0.42
CCDC40-201ENST00000269318 ERVK-5Q9HDB9 667 aa17.7■□□□□ 0.42
CCDC40-201ENST00000269318 AMACRQ9UHK6 382 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms