RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 COL23A1Q86Y22 540 aaPredicted RBP11.3□□□□□ -0.6
CD44-201ENST00000263398 RNF135Q8IUD6 432 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 LINC00116Q8NCU8 138 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 RDM1Q8NG50 284 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 ARL8AQ96BM9 186 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 GCNAQ96QF7 691 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 ZSWIM1Q9BR11 485 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 THAP2Q9H0W7 228 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 DMGDHQ9UI17 866 aaKnown RBP11.3□□□□□ -0.6
CD44-201ENST00000263398 CHMP2BQ9UQN3 213 aa11.3□□□□□ -0.6
CD44-201ENST00000263398 EXTL3O43909 919 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 KRT4P19013 534 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 OCA2Q04671 838 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 DYNC1I2Q13409 638 aaKnown RBP11.29□□□□□ -0.6
CD44-201ENST00000263398 IMPG1Q17R60 797 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 RFX8Q6ZV50 586 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 C3orf20Q8ND61 904 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 CASKIN2Q8WXE0 1202 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 ATXN7L3BQ96GX2 97 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 EIF2AQ9BY44 585 aaKnown RBP11.29□□□□□ -0.6
CD44-201ENST00000263398 FRMD8Q9BZ67 464 aaPredicted RBP11.29□□□□□ -0.6
CD44-201ENST00000263398 E5RI56 91 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 MAGEB2O15479 319 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 RGS7P49802 495 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 ALDH18A1P54886 795 aaKnown RBP11.29□□□□□ -0.6
CD44-201ENST00000263398 PTK7Q13308 1070 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 TMEM132DQ14C87 1099 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 AGR3Q8TD06 166 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 SPON2Q9BUD6 331 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 ABCF3Q9NUQ8 709 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 ZNF70Q9UC06 446 aaPredicted RBP11.29□□□□□ -0.6
CD44-201ENST00000263398 SLC13A4Q9UKG4 626 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 MTO1Q9Y2Z2 717 aaKnown RBP11.29□□□□□ -0.6
CD44-201ENST00000263398 FOXN3O00409 490 aaPredicted RBP11.29□□□□□ -0.6
CD44-201ENST00000263398 FGFR2P21802 821 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 TRADDQ15628 312 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 ANGPTL8Q6UXH0 198 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 FASTKD5Q7L8L6 764 aaKnown RBP11.29□□□□□ -0.6
CD44-201ENST00000263398 ZNF280CQ8ND82 737 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 ARMC2Q8NEN0 867 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 MED15Q96RN5 788 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 KCNK16Q96T55 309 aa11.29□□□□□ -0.6
CD44-201ENST00000263398 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.29□□□□□ -0.6
CD44-201ENST00000263398 SYCE1LA8MT33 242 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 ANP32DO95626 131 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 WEE2P0C1S8 567 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 RALAP11233 206 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 KLC1Q07866 573 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 ACAD10Q6JQN1 1059 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 GPAT2Q6NUI2 795 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 DTX3LQ8TDB6 740 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 KRT35Q92764 455 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 AGAP3Q96P47 875 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 NT5C1AQ9BXI3 368 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 SLC24A3Q9HC58 644 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 TMEM247A6NEH6 219 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 MUTP22033 750 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 CHRNA5P30532 468 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 LONP2Q86WA8 852 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 C2orf69Q8N8R5 385 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 MTBPQ96DY7 904 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 SEMA6BQ9H3T3 888 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 PLEKHA5Q9HAU0 1116 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 EML4Q9HC35 981 aaKnown RBP11.28□□□□□ -0.6
CD44-201ENST00000263398 SARS2Q9NP81 518 aaKnown RBP11.28□□□□□ -0.6
CD44-201ENST00000263398 ITSN1Q15811 1721 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 CNTNAP4Q9C0A0 1308 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 UBA6A0AVT1 1052 aaPredicted RBP11.28□□□□□ -0.6
CD44-201ENST00000263398 PSMD3O43242 534 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 IL18RAPO95256 599 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 IL10P22301 178 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 MKRN4PQ13434 485 aaPredicted RBP11.28□□□□□ -0.6
CD44-201ENST00000263398 EPC2Q52LR7 807 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 ZBTB41Q5SVQ8 909 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 MYCBPAPQ8TBZ2 947 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 ASAP3Q8TDY4 903 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 TARS2Q9BW92 718 aaKnown RBP11.28□□□□□ -0.6
CD44-201ENST00000263398 LMCD1Q9NZU5 365 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 LRRIQ3A6PVS8 624 aaPredicted RBP11.28□□□□□ -0.6
CD44-201ENST00000263398 MED24O75448 989 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 KLHL2O95198 593 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 GZMAP12544 262 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 IFNA8P32881 189 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 MED21Q13503 144 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 CAPRIN1Q14444 709 aaKnown RBP11.28□□□□□ -0.6
CD44-201ENST00000263398 LVRNQ6Q4G3 990 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 C4orf22Q6V702 233 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 SNX19Q92543 992 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 FAM118BQ9BPY3 351 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 PI4K2AQ9BTU6 479 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 OLA1Q9NTK5 396 aaKnown RBP11.28□□□□□ -0.6
CD44-201ENST00000263398 MRGBPQ9NV56 204 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 ARHGAP20Q9P2F6 1191 aa11.28□□□□□ -0.6
CD44-201ENST00000263398 MARCOQ9UEW3 520 aaPredicted RBP11.28□□□□□ -0.6
CD44-201ENST00000263398 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.28□□□□□ -0.6
CD44-201ENST00000263398 EIF4E1BA6NMX2 242 aaKnown RBP11.27□□□□□ -0.6
CD44-201ENST00000263398 GTF2H1P32780 548 aa11.27□□□□□ -0.6
CD44-201ENST00000263398 SPRP35270 261 aaPredicted RBP11.27□□□□□ -0.6
CD44-201ENST00000263398 HERVK_113P62684 666 aa11.27□□□□□ -0.6
CD44-201ENST00000263398 ZNF235Q14590 738 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms