RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 TMEM143Q96AN5 459 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 ACAD9Q9H845 621 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 APOBEC3GQ9HC16 384 aaKnown RBP17.43■□□□□ 0.38
HOXD3-201ENST00000249440 PARVAQ9NVD7 372 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 LRRIQ4A6NIV6 560 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 O00370 1275 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 CFHP08603 1231 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 TAS2R40P59535 323 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 LMNB2Q03252 620 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 C1QBPQ07021 282 aaKnown RBP17.43■□□□□ 0.38
HOXD3-201ENST00000249440 TMEM132BQ14DG7 1078 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 NBPF12Q5TAG4 269 aaPredicted RBP17.43■□□□□ 0.38
HOXD3-201ENST00000249440 CYB5D1Q6P9G0 228 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 SGSM3Q96HU1 749 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 CCDC77Q9BR77 488 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 MSTO1Q9BUK6 570 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 TEX13BQ9BXU2 312 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 A1CFQ9NQ94 594 aaKnown RBP17.43■□□□□ 0.38
HOXD3-201ENST00000249440 ZNF302Q9NR11 478 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 PICK1Q9NRD5 415 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 DNAJC17Q9NVM6 304 aaKnown RBP17.43■□□□□ 0.38
HOXD3-201ENST00000249440 NINJ2Q9NZG7 142 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 CNTN6Q9UQ52 1028 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 MAFBQ9Y5Q3 323 aaPredicted RBP17.43■□□□□ 0.38
HOXD3-201ENST00000249440 ATP2A1O14983 1001 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 CHUKO15111 745 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 GSTA1P08263 222 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 CLTAP09496 248 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 GLRA2P23416 452 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 RPS12P25398 132 aaKnown RBP17.42■□□□□ 0.38
HOXD3-201ENST00000249440 SSR1P43307 286 aaKnown RBP17.42■□□□□ 0.38
HOXD3-201ENST00000249440 CEP128Q6ZU80 1094 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 RELL1Q8IUW5 271 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 RBBP8NLQ8NC74 664 aaPredicted RBP17.42■□□□□ 0.38
HOXD3-201ENST00000249440 SLC7A3Q8WY07 619 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 ZBTB45Q96K62 511 aaPredicted RBP17.42■□□□□ 0.38
HOXD3-201ENST00000249440 CGRRF1Q99675 332 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 HAPLN2Q9GZV7 340 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 DHX33Q9H6R0 707 aaKnown RBP17.42■□□□□ 0.38
HOXD3-201ENST00000249440 HAUS2Q9NVX0 235 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 HACL1Q9UJ83 578 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 USTQ9Y2C2 406 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 ZNF541Q9H0D2 1346 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 SNX3O60493 162 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 OATP04181 439 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 PTPRAP18433 802 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 HMGCS2P54868 508 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 NOP14P78316 857 aaKnown RBP17.42■□□□□ 0.38
HOXD3-201ENST00000249440 LRRC14Q15048 493 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 VSTM1Q6UX27 236 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 GSTA5Q7RTV2 222 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 TRPM8Q7Z2W7 1104 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 FEZF2Q8TBJ5 459 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 C12orf42Q96LP6 360 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 KCNK9Q9NPC2 374 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 ANKFY1Q9P2R3 1169 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 IP6K2Q9UHH9 426 aa17.42■□□□□ 0.38
HOXD3-201ENST00000249440 SIP14410 1827 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 CDH16O75309 829 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 CD58P19256 250 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 ATP4AP20648 1035 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 IZUMO3Q5VZ72 239 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 PARP9Q8IXQ6 854 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 CCHCR1Q8TD31 782 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 MGARPQ8TDB4 240 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 ASAP3Q8TDY4 903 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 ZKSCAN4Q969J2 545 aaPredicted RBP17.41■□□□□ 0.38
HOXD3-201ENST00000249440 FOXP3Q9BZS1 431 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 MAF1Q9H063 256 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 CTNNAL1Q9UBT7 734 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 NUB1Q9Y5A7 615 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 A0A0B4J269 797 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 C19orf81C9J6K1 198 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 BRAFP15056 766 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 ARL2P36404 184 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 SP2Q02086 613 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 STAT4Q14765 748 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 TARS2Q9BW92 718 aaKnown RBP17.41■□□□□ 0.38
HOXD3-201ENST00000249440 IMPG2Q9BZV3 1241 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 FBXO40Q9UH90 709 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 SLC12A4Q9UP95 1085 aa17.41■□□□□ 0.38
HOXD3-201ENST00000249440 ATG7O95352 703 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 CREB1P16220 341 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 GJC1P36383 396 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 NFX1Q12986 1120 aaKnown RBP17.4■□□□□ 0.38
HOXD3-201ENST00000249440 NCOA4Q13772 614 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 STXBP2Q15833 593 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 SNCBQ16143 134 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 SAMD7Q7Z3H4 446 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 RCOR2Q8IZ40 523 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 ZNF606Q8WXB4 792 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 RBM41Q96IZ5 413 aaKnown RBP17.4■□□□□ 0.38
HOXD3-201ENST00000249440 PWWP2AQ96N64 755 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 WRNIP1Q96S55 665 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 FAM118BQ9BPY3 351 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 LGALS13Q9UHV8 139 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 ZNF112Q9UJU3 913 aa17.4■□□□□ 0.38
HOXD3-201ENST00000249440 GSTTP1A0A1W2PQM5 241 aa17.39■□□□□ 0.38
HOXD3-201ENST00000249440 TCP11X1B4DZS4 312 aa17.39■□□□□ 0.38
HOXD3-201ENST00000249440 KLRC2P26717 231 aa17.39■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms