RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 NOP14P78316 857 aaKnown RBP29.29■■■□□ 2.28
CHMP4B-201ENST00000217402 APBA1Q02410 837 aa29.29■■■□□ 2.28
CHMP4B-201ENST00000217402 KCNMA1Q12791 1236 aa29.29■■■□□ 2.28
CHMP4B-201ENST00000217402 SYCP1Q15431 976 aa29.29■■■□□ 2.28
CHMP4B-201ENST00000217402 SV2CQ496J9 727 aa29.29■■■□□ 2.28
CHMP4B-201ENST00000217402 WDR44Q5JSH3 913 aa29.29■■■□□ 2.28
CHMP4B-201ENST00000217402 NXF1Q9UBU9 619 aaKnown RBP29.29■■■□□ 2.28
CHMP4B-201ENST00000217402 ADAM28Q9UKQ2 775 aa29.29■■■□□ 2.28
CHMP4B-201ENST00000217402 PCDHB12Q9Y5F1 795 aa29.29■■■□□ 2.28
CHMP4B-201ENST00000217402 TMEM189-UBE2V1I3L0A0 370 aa29.28■■■□□ 2.28
CHMP4B-201ENST00000217402 CBFA2T2O43439 604 aa29.28■■■□□ 2.28
CHMP4B-201ENST00000217402 PON1P27169 355 aa29.28■■■□□ 2.28
CHMP4B-201ENST00000217402 WDR72Q3MJ13 1102 aa29.28■■■□□ 2.28
CHMP4B-201ENST00000217402 PRPF38BQ5VTL8 546 aaKnown RBP29.28■■■□□ 2.28
CHMP4B-201ENST00000217402 TRIM65Q6PJ69 517 aa29.28■■■□□ 2.28
CHMP4B-201ENST00000217402 SLC39A11Q8N1S5 342 aa29.28■■■□□ 2.28
CHMP4B-201ENST00000217402 PCMTD1Q96MG8 357 aaPredicted RBP29.28■■■□□ 2.28
CHMP4B-201ENST00000217402 C17orf80Q9BSJ5 609 aa29.28■■■□□ 2.28
CHMP4B-201ENST00000217402 LSM14BQ9BX40 385 aaKnown RBP29.28■■■□□ 2.28
CHMP4B-201ENST00000217402 APOBEC3GQ9HC16 384 aaKnown RBP29.28■■■□□ 2.28
CHMP4B-201ENST00000217402 KPNA7A9QM74 516 aa29.27■■■□□ 2.28
CHMP4B-201ENST00000217402 TPM3P06753 285 aa29.27■■■□□ 2.28
CHMP4B-201ENST00000217402 TAF4BQ92750 862 aa29.27■■■□□ 2.28
CHMP4B-201ENST00000217402 IGSF21Q96ID5 467 aa29.27■■■□□ 2.28
CHMP4B-201ENST00000217402 GRPEL1Q9HAV7 217 aa29.27■■■□□ 2.28
CHMP4B-201ENST00000217402 POLIQ9UNA4 740 aa29.27■■■□□ 2.28
CHMP4B-201ENST00000217402 SNX9Q9Y5X1 595 aa29.27■■■□□ 2.28
CHMP4B-201ENST00000217402 GSE1Q14687 1217 aa29.27■■■□□ 2.28
CHMP4B-201ENST00000217402 TIGD5Q53EQ6 642 aa29.27■■■□□ 2.28
CHMP4B-201ENST00000217402 ZNF667Q5HYK9 610 aa29.27■■■□□ 2.28
CHMP4B-201ENST00000217402 ERGIC2Q96RQ1 377 aa29.27■■■□□ 2.28
CHMP4B-201ENST00000217402 SPG21Q9NZD8 308 aa29.27■■■□□ 2.28
CHMP4B-201ENST00000217402 STAU1O95793 577 aaKnown RBP29.26■■■□□ 2.27
CHMP4B-201ENST00000217402 DNAJB2P25686 324 aa29.26■■■□□ 2.27
CHMP4B-201ENST00000217402 TAP1Q03518 808 aa29.26■■■□□ 2.27
CHMP4B-201ENST00000217402 DSTYKQ6XUX3 929 aa29.26■■■□□ 2.27
CHMP4B-201ENST00000217402 SCARA5Q6ZMJ2 495 aa29.26■■■□□ 2.27
CHMP4B-201ENST00000217402 TATDN2Q93075 761 aa29.26■■■□□ 2.27
CHMP4B-201ENST00000217402 TMEM169Q96HH4 297 aa29.26■■■□□ 2.27
CHMP4B-201ENST00000217402 NT5C1BQ96P26 610 aa29.26■■■□□ 2.27
CHMP4B-201ENST00000217402 VRTNQ9H8Y1 702 aa29.26■■■□□ 2.27
CHMP4B-201ENST00000217402 SIK3Q9Y2K2 1263 aa29.26■■■□□ 2.27
CHMP4B-201ENST00000217402 A0A1W2PPC1 479 aa29.25■■■□□ 2.27
CHMP4B-201ENST00000217402 PPM1AP35813 382 aa29.25■■■□□ 2.27
CHMP4B-201ENST00000217402 BMPR1AP36894 532 aa29.25■■■□□ 2.27
CHMP4B-201ENST00000217402 AARSP49588 968 aaKnown RBP eCLIP29.25■■■□□ 2.27
CHMP4B-201ENST00000217402 TNNC1P63316 161 aa29.25■■■□□ 2.27
CHMP4B-201ENST00000217402 PPP2R2DQ66LE6 453 aa29.25■■■□□ 2.27
CHMP4B-201ENST00000217402 FUT10Q6P4F1 479 aa29.25■■■□□ 2.27
CHMP4B-201ENST00000217402 MMS19Q96T76 1030 aa29.25■■■□□ 2.27
CHMP4B-201ENST00000217402 FAM207AQ9NSI2 230 aaPredicted RBP29.25■■■□□ 2.27
CHMP4B-201ENST00000217402 RWDD3Q9Y3V2 267 aa29.25■■■□□ 2.27
CHMP4B-201ENST00000217402 CARNS1A5YM72 827 aa29.24■■■□□ 2.27
CHMP4B-201ENST00000217402 SMAD3P84022 425 aaKnown RBP29.24■■■□□ 2.27
CHMP4B-201ENST00000217402 ARHGEF19Q8IW93 802 aa29.24■■■□□ 2.27
CHMP4B-201ENST00000217402 KLHL23Q8NBE8 558 aa29.24■■■□□ 2.27
CHMP4B-201ENST00000217402 SENP8Q96LD8 212 aa29.24■■■□□ 2.27
CHMP4B-201ENST00000217402 TGS1Q96RS0 853 aaKnown RBP29.24■■■□□ 2.27
CHMP4B-201ENST00000217402 NIF3L1Q9GZT8 377 aa29.24■■■□□ 2.27
CHMP4B-201ENST00000217402 SIX2Q9NPC8 291 aa29.24■■■□□ 2.27
CHMP4B-201ENST00000217402 SF3B1O75533 1304 aaKnown RBP eCLIP29.24■■■□□ 2.273e-9■■■■■ 206.8
CHMP4B-201ENST00000217402 FGF18O76093 207 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 PHLDB3Q6NSJ2 640 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 GJB7Q6PEY0 223 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 PPM1KQ8N3J5 372 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 GPR62Q9BZJ7 368 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 CERS4Q9HA82 394 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 SLC28A3Q9HAS3 691 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 NLRC5Q86WI3 1866 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 CYB561D2O14569 222 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 TRAPPC3O43617 180 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 RRAGAQ7L523 313 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 TIFAQ96CG3 184 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 SUSD3Q96L08 255 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 ARID3AQ99856 593 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 SMYD3Q9H7B4 428 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 GDAP2Q9NXN4 497 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 APEX2Q9UBZ4 518 aa29.23■■■□□ 2.27
CHMP4B-201ENST00000217402 A0A1W2PQC6 194 aa29.22■■■□□ 2.27
CHMP4B-201ENST00000217402 P4HA1P13674 534 aa29.22■■■□□ 2.27
CHMP4B-201ENST00000217402 ASPAP45381 313 aa29.22■■■□□ 2.27
CHMP4B-201ENST00000217402 RAP1GAPP47736 663 aa29.22■■■□□ 2.27
CHMP4B-201ENST00000217402 ZNF75DP51815 510 aa29.22■■■□□ 2.27
CHMP4B-201ENST00000217402 B3GALT6Q96L58 329 aa29.22■■■□□ 2.27
CHMP4B-201ENST00000217402 VN1R3Q9BXE9 311 aa29.22■■■□□ 2.27
CHMP4B-201ENST00000217402 TIMM13Q9Y5L4 95 aaPredicted RBP29.22■■■□□ 2.27
CHMP4B-201ENST00000217402 HUS1O60921 280 aa29.21■■■□□ 2.27
CHMP4B-201ENST00000217402 PAX3P23760 479 aa29.21■■■□□ 2.27
CHMP4B-201ENST00000217402 PBX1P40424 430 aa29.21■■■□□ 2.27
CHMP4B-201ENST00000217402 LRIT3Q3SXY7 679 aa29.21■■■□□ 2.27
CHMP4B-201ENST00000217402 FAM171A1Q5VUB5 890 aa29.21■■■□□ 2.27
CHMP4B-201ENST00000217402 DPY19L2P1Q6NXN4 242 aa29.21■■■□□ 2.27
CHMP4B-201ENST00000217402 KAT5Q92993 513 aa29.21■■■□□ 2.27
CHMP4B-201ENST00000217402 L1RE1Q9UN81 338 aa29.21■■■□□ 2.27
CHMP4B-201ENST00000217402 M0QZQ0 153 aa29.2■■■□□ 2.27
CHMP4B-201ENST00000217402 EPHB6O15197 1021 aa29.2■■■□□ 2.27
CHMP4B-201ENST00000217402 ODC1P11926 461 aa29.2■■■□□ 2.27
CHMP4B-201ENST00000217402 ERVK-21P61565 698 aa29.2■■■□□ 2.27
CHMP4B-201ENST00000217402 KLHDC7AQ5VTJ3 777 aa29.2■■■□□ 2.27
CHMP4B-201ENST00000217402 APPL2Q8NEU8 664 aa29.2■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms