RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PLSCR1O15162 318 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 MFAP3P55082 362 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 SH3PXD2AQ5TCZ1 1133 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 ZNF449Q6P9G9 518 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 EMC1Q8N766 993 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 CHURC1Q8WUH1 139 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 CKAP2Q8WWK9 683 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 TFAP2BQ92481 460 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 MFSD14AQ96MC6 490 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 NAP1L3Q99457 506 aaPredicted RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 OSBPL8Q9BZF1 889 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 MYLK2Q9H1R3 596 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 PXMP2Q9NR77 195 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 RNF19AQ9NV58 838 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 HERC5Q9UII4 1024 aaKnown RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 TOP3BO95985 862 aaKnown RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 ELF1P32519 619 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 SPATS2Q86XZ4 545 aaKnown RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 AGGF1Q8N302 714 aaeCLIP11.35□□□□□ -0.59
USP28-201ENST00000003302 WDTC1Q8N5D0 677 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 FBXL18Q96ME1 805 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 KIAA1586Q9HCI6 787 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.35□□□□□ -0.59
USP28-201ENST00000003302 SAMD15Q9P1V8 674 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 FBXO40Q9UH90 709 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 ATP8B3O60423 1300 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 RASA4BC9J798 803 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 RASA4O43374 803 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 WEE2P0C1S8 567 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 NQO1P15559 274 aaKnown RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 BRD2P25440 801 aaKnown RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 IL1R2P27930 398 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 OSTNP61366 133 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 NOMO3P69849 1222 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 SETQ01105 290 aaPredicted RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 BNIP1Q12981 228 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 EAPPQ56P03 285 aaPredicted RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 IGDCC3Q8IVU1 814 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 TMEM192Q8IY95 271 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 BICD1Q96G01 975 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 TEPSINQ96N21 525 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 FAM167BQ9BTA0 163 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 MRIQ9BWK5 157 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 ACTR5Q9H9F9 607 aaPredicted RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 SLC38A10Q9HBR0 1119 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 SAYSD1Q9NPB0 183 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 GEMIN8Q9NWZ8 242 aaKnown RBP11.35□□□□□ -0.59
USP28-201ENST00000003302 ADAM22Q9P0K1 906 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 KANSL3Q9P2N6 904 aa11.35□□□□□ -0.59
USP28-201ENST00000003302 SRRM3A6NNA2 597 aaPredicted RBP11.34□□□□□ -0.59
USP28-201ENST00000003302 GMPRP36959 345 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 ABL2P42684 1182 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 GPX6P59796 221 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 PRKG1Q13976 671 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 PLCB4Q15147 1175 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 EEPD1Q7L9B9 569 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 NETO2Q8NC67 525 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 SNF8Q96H20 258 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 PGLYRP2Q96PD5 576 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 H0Y3Z8 333 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 AVILO75366 819 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 F7P08709 466 aaPredicted RBP11.34□□□□□ -0.59
USP28-201ENST00000003302 CNTN2Q02246 1040 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 ZFYVE27Q5T4F4 411 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 CES4AQ5XG92 561 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 ASRGL1Q7L266 308 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 SPATA21Q7Z572 469 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 PIWIL1Q96J94 861 aaKnown RBP11.34□□□□□ -0.59
USP28-201ENST00000003302 MCEEQ96PE7 176 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 CCDC134Q9H6E4 229 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 C5orf42Q9H799 3197 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 TLR3O15455 904 aaKnown RBP11.34□□□□□ -0.59
USP28-201ENST00000003302 C4BPAP04003 597 aaKnown RBP11.34□□□□□ -0.59
USP28-201ENST00000003302 HOXA7P31268 230 aaPredicted RBP11.34□□□□□ -0.59
USP28-201ENST00000003302 RAP1GAPP47736 663 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 PTK6Q13882 451 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 FNBP1LQ5T0N5 605 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 CCDC91Q7Z6B0 441 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 NLRX1Q86UT6 975 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 TRIM50Q86XT4 487 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 C12orf56Q8IXR9 622 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 TTC8Q8TAM2 541 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 ERP27Q96DN0 273 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 L3MBTL3Q96JM7 780 aaPredicted RBP11.34□□□□□ -0.59
USP28-201ENST00000003302 TRPC5Q9UL62 973 aaPredicted RBP11.34□□□□□ -0.59
USP28-201ENST00000003302 UBE4BO95155 1302 aa11.34□□□□□ -0.59
USP28-201ENST00000003302 CLUHO75153 1309 aa11.33□□□□□ -0.59
USP28-201ENST00000003302 SLC26A4O43511 780 aa11.33□□□□□ -0.59
USP28-201ENST00000003302 KCNA2P16389 499 aa11.33□□□□□ -0.59
USP28-201ENST00000003302 PRKCEQ02156 737 aa11.33□□□□□ -0.59
USP28-201ENST00000003302 DMP1Q13316 513 aaPredicted RBP11.33□□□□□ -0.59
USP28-201ENST00000003302 NBPF12Q5TAG4 269 aaPredicted RBP11.33□□□□□ -0.59
USP28-201ENST00000003302 LARGE2Q8N3Y3 721 aa11.33□□□□□ -0.59
USP28-201ENST00000003302 KLHL29Q96CT2 875 aa11.33□□□□□ -0.59
USP28-201ENST00000003302 RPAP3Q9H6T3 665 aaPredicted RBP11.33□□□□□ -0.59
USP28-201ENST00000003302 HMGXB4Q9UGU5 601 aa11.33□□□□□ -0.59
USP28-201ENST00000003302 FAM155BO75949 473 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 CYP1A1P04798 512 aaPredicted RBP11.33□□□□□ -0.6
USP28-201ENST00000003302 ATF2P15336 505 aa11.33□□□□□ -0.6
USP28-201ENST00000003302 TUBP50607 506 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms