RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	CARD11	Q9BXL7	1154 aa		14.17	□□□□□ -0.14
CHD2-223	ENST00000636306	BACH2	Q9BYV9	841 aa		14.17	□□□□□ -0.14
CHD2-223	ENST00000636306	DHX29	Q7Z478	1369 aa	Known RBP	14.16	□□□□□ -0.14
CHD2-223	ENST00000636306	CD109	Q6YHK3	1445 aa		14.16	□□□□□ -0.14
CHD2-223	ENST00000636306	POGZ	Q7Z3K3	1410 aa		14.16	□□□□□ -0.14
CHD2-223	ENST00000636306	HSP90AA2P	Q14568	343 aa	Predicted RBP	14.16	□□□□□ -0.14
CHD2-223	ENST00000636306	DCAF11	Q8TEB1	546 aa		14.16	□□□□□ -0.14
CHD2-223	ENST00000636306	GPRASP1	Q5JY77	1395 aa		14.15	□□□□□ -0.14
CHD2-223	ENST00000636306	NUDC	Q9Y266	331 aa		14.14	□□□□□ -0.15
CHD2-223	ENST00000636306	LMTK2	Q8IWU2	1503 aa		14.14	□□□□□ -0.15
CHD2-223	ENST00000636306	MROH1	Q8NDA8	1641 aa		14.14	□□□□□ -0.15
CHD2-223	ENST00000636306	PTPRT	O14522	1441 aa		14.14	□□□□□ -0.15
CHD2-223	ENST00000636306	MLH3	Q9UHC1	1453 aa		14.14	□□□□□ -0.15
CHD2-223	ENST00000636306	EFCAB6	Q5THR3	1501 aa		14.14	□□□□□ -0.15
CHD2-223	ENST00000636306	AFAP1	Q8N556	730 aa		14.14	□□□□□ -0.15
CHD2-223	ENST00000636306	NPM2	Q86SE8	214 aa	Known RBP	14.13	□□□□□ -0.15
CHD2-223	ENST00000636306	CLTCL1	P53675	1640 aa		14.12	□□□□□ -0.15
CHD2-223	ENST00000636306	KIAA1210	Q9ULL0	1709 aa		14.12	□□□□□ -0.15
CHD2-223	ENST00000636306	HSP90AA1	P07900	732 aa	Known RBP	14.12	□□□□□ -0.15
CHD2-223	ENST00000636306	MADD	Q8WXG6	1647 aa		14.12	□□□□□ -0.15
CHD2-223	ENST00000636306	KIF1B	O60333	1816 aa		14.11	□□□□□ -0.15
CHD2-223	ENST00000636306	GLI2	P10070	1586 aa		14.11	□□□□□ -0.15
CHD2-223	ENST00000636306	MAP3K4	Q9Y6R4	1608 aa		14.11	□□□□□ -0.15
CHD2-223	ENST00000636306	KTN1	Q86UP2	1357 aa	Known RBP	14.1	□□□□□ -0.15
CHD2-223	ENST00000636306	KDM2A	Q9Y2K7	1162 aa		14.1	□□□□□ -0.15
CHD2-223	ENST00000636306	L1TD1	Q5T7N2	865 aa	Known RBP	14.09	□□□□□ -0.15
CHD2-223	ENST00000636306	PRKRIP1	Q9H875	184 aa	Predicted RBP	14.09	□□□□□ -0.15
CHD2-223	ENST00000636306	IQGAP1	P46940	1657 aa		14.08	□□□□□ -0.16
CHD2-223	ENST00000636306	ZC3H13	Q5T200	1668 aa	Known RBP	14.08	□□□□□ -0.16
CHD2-223	ENST00000636306	PPRC1	Q5VV67	1664 aa	Known RBP	14.07	□□□□□ -0.16
CHD2-223	ENST00000636306	ABCA6	Q8N139	1617 aa		14.07	□□□□□ -0.16
CHD2-223	ENST00000636306	CENPJ	Q9HC77	1338 aa	Predicted RBP	14.07	□□□□□ -0.16
CHD2-223	ENST00000636306	KIF3B	O15066	747 aa		14.06	□□□□□ -0.16
CHD2-223	ENST00000636306	MRS2	Q9HD23	443 aa		14.06	□□□□□ -0.16
CHD2-223	ENST00000636306	COL17A1	Q9UMD9	1497 aa	Predicted RBP	14.06	□□□□□ -0.16
CHD2-223	ENST00000636306	MYOM2	P54296	1465 aa		14.06	□□□□□ -0.16
CHD2-223	ENST00000636306	RRAGD	Q9NQL2	400 aa	Predicted RBP	14.06	□□□□□ -0.16
CHD2-223	ENST00000636306	RICTOR	Q6R327	1708 aa		14.05	□□□□□ -0.16
CHD2-223	ENST00000636306	IFT172	Q9UG01	1749 aa		14.05	□□□□□ -0.16
CHD2-223	ENST00000636306	RGL3	Q3MIN7	710 aa		14.04	□□□□□ -0.16
CHD2-223	ENST00000636306	FAM9B	Q8IZU0	186 aa		14.04	□□□□□ -0.16
CHD2-223	ENST00000636306	FRMPD1	Q5SYB0	1578 aa		14.04	□□□□□ -0.16
CHD2-223	ENST00000636306	CCDC184	Q52MB2	194 aa		14.04	□□□□□ -0.16
CHD2-223	ENST00000636306	RIMBP3C	A6NJZ7	1639 aa		14.03	□□□□□ -0.16
CHD2-223	ENST00000636306	RIMBP3B	A6NNM3	1639 aa		14.03	□□□□□ -0.16
CHD2-223	ENST00000636306	RIMBP3	Q9UFD9	1639 aa		14.03	□□□□□ -0.16
CHD2-223	ENST00000636306	CLCN1	P35523	988 aa		14.03	□□□□□ -0.16
CHD2-223	ENST00000636306	DIP2C	Q9Y2E4	1556 aa		14.03	□□□□□ -0.16
CHD2-223	ENST00000636306	ST20-MTHFS	A0A0A6YYL1	179 aa		14.02	□□□□□ -0.16
CHD2-223	ENST00000636306	PNN	Q9H307	717 aa	Known RBP	14.02	□□□□□ -0.16
CHD2-223	ENST00000636306	EIF3A	Q14152	1382 aa	Known RBP	14.02	□□□□□ -0.16
CHD2-223	ENST00000636306	CAMSAP1	Q5T5Y3	1602 aa		14.02	□□□□□ -0.17
CHD2-223	ENST00000636306	NAP1L5	Q96NT1	182 aa	Predicted RBP	14.01	□□□□□ -0.17
CHD2-223	ENST00000636306	CALD1	Q05682	793 aa	Known RBP	14.01	□□□□□ -0.17
CHD2-223	ENST00000636306	POLR3GL	Q9BT43	218 aa		14.01	□□□□□ -0.17
CHD2-223	ENST00000636306	ADGRB3	O60242	1522 aa		14	□□□□□ -0.17
CHD2-223	ENST00000636306	ZMYM4	Q5VZL5	1548 aa		14	□□□□□ -0.17
CHD2-223	ENST00000636306	SCAF11	Q99590	1463 aa	Known RBP	14	□□□□□ -0.17
CHD2-223	ENST00000636306	ABCC3	O15438	1527 aa		13.99	□□□□□ -0.17
CHD2-223	ENST00000636306	MROH2A	A6NES4	1674 aa		13.99	□□□□□ -0.17
CHD2-223	ENST00000636306	DIP2B	Q9P265	1576 aa		13.98	□□□□□ -0.17
CHD2-223	ENST00000636306	TMF1	P82094	1093 aa		13.98	□□□□□ -0.17
CHD2-223	ENST00000636306	RBM10	P98175	930 aa	Known RBP	13.98	□□□□□ -0.17
CHD2-223	ENST00000636306	AAMP	Q13685	434 aa		13.98	□□□□□ -0.17
CHD2-223	ENST00000636306	CDCA8	Q53HL2	280 aa		13.97	□□□□□ -0.17
CHD2-223	ENST00000636306	RALBP1	Q15311	655 aa		13.96	□□□□□ -0.17
CHD2-223	ENST00000636306	SENP3	Q9H4L4	574 aa	Predicted RBP	13.96	□□□□□ -0.17
CHD2-223	ENST00000636306	SYNM	O15061	1565 aa		13.96	□□□□□ -0.17
CHD2-223	ENST00000636306	FGD1	P98174	961 aa		13.96	□□□□□ -0.18
CHD2-223	ENST00000636306	SETBP1	Q9Y6X0	1596 aa		13.96	□□□□□ -0.18
CHD2-223	ENST00000636306	PPL	O60437	1756 aa		13.95	□□□□□ -0.18
CHD2-223	ENST00000636306	TPM2	P07951	284 aa		13.95	□□□□□ -0.18
CHD2-223	ENST00000636306	PDCL3	Q9H2J4	239 aa		13.95	□□□□□ -0.18
CHD2-223	ENST00000636306	KDM5A	P29375	1690 aa	Known RBP	13.95	□□□□□ -0.18
CHD2-223	ENST00000636306	RERE	Q9P2R6	1566 aa		13.94	□□□□□ -0.18
CHD2-223	ENST00000636306	MYO3A	Q8NEV4	1616 aa		13.94	□□□□□ -0.18
CHD2-223	ENST00000636306	RRP1	P56182	461 aa	Known RBP	13.94	□□□□□ -0.18
CHD2-223	ENST00000636306	BRD4	O60885	1362 aa	Predicted RBP	13.94	□□□□□ -0.18
CHD2-223	ENST00000636306	NRXN1	Q9ULB1	1477 aa		13.94	□□□□□ -0.18
CHD2-223	ENST00000636306	FRAT2	O75474	233 aa	Predicted RBP	13.94	□□□□□ -0.18
CHD2-223	ENST00000636306	NBPF1	Q3BBV0	1214 aa		13.94	□□□□□ -0.18
CHD2-223	ENST00000636306	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.93	□□□□□ -0.18
CHD2-223	ENST00000636306	NPAT	Q14207	1427 aa		13.93	□□□□□ -0.18
CHD2-223	ENST00000636306	ARHGAP31	Q2M1Z3	1444 aa		13.93	□□□□□ -0.18
CHD2-223	ENST00000636306	PIK3C2B	O00750	1634 aa		13.93	□□□□□ -0.18
CHD2-223	ENST00000636306	UGGT1	Q9NYU2	1555 aa		13.93	□□□□□ -0.18
CHD2-223	ENST00000636306	RPGRIP1L	Q68CZ1	1315 aa		13.91	□□□□□ -0.18
CHD2-223	ENST00000636306	TESK2	Q96S53	571 aa		13.91	□□□□□ -0.18
CHD2-223	ENST00000636306	DISP3	Q9P2K9	1392 aa		13.9	□□□□□ -0.18
CHD2-223	ENST00000636306	NOS1	P29475	1434 aa		13.9	□□□□□ -0.19
CHD2-223	ENST00000636306	PARD3	Q8TEW0	1356 aa		13.89	□□□□□ -0.19
CHD2-223	ENST00000636306	EXOC6	Q8TAG9	804 aa		13.89	□□□□□ -0.19
CHD2-223	ENST00000636306	PRDM4	Q9UKN5	801 aa		13.89	□□□□□ -0.19
CHD2-223	ENST00000636306	TMC1	Q8TDI8	760 aa		13.88	□□□□□ -0.19
CHD2-223	ENST00000636306	AGL	P35573	1532 aa		13.87	□□□□□ -0.19
CHD2-223	ENST00000636306	PREX1	Q8TCU6	1659 aa		13.87	□□□□□ -0.19
CHD2-223	ENST00000636306	PDE4C	Q08493	712 aa		13.87	□□□□□ -0.19
CHD2-223	ENST00000636306	CYB5RL	Q6IPT4	315 aa		13.87	□□□□□ -0.19
CHD2-223	ENST00000636306	GGT6	Q6P531	493 aa		13.87	□□□□□ -0.19
CHD2-223	ENST00000636306	SIGLEC1	Q9BZZ2	1709 aa		13.87	□□□□□ -0.19

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