RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 CCDC141Q6ZP82 1450 aa16.3■□□□□ 0.2
MSH6-215ENST00000622629 NUTM2FA1L443 756 aa16.3■□□□□ 0.2
MSH6-215ENST00000622629 NCLP19338 710 aaKnown RBP16.3■□□□□ 0.2
MSH6-215ENST00000622629 SCAPERQ9BY12 1400 aa16.3■□□□□ 0.2
MSH6-215ENST00000622629 HSCBQ8IWL3 235 aa16.29■□□□□ 0.2
MSH6-215ENST00000622629 MTHFSP49914 203 aa16.29■□□□□ 0.2
MSH6-215ENST00000622629 CHMP4BQ9H444 224 aaKnown RBP16.29■□□□□ 0.2
MSH6-215ENST00000622629 TCOF1Q13428 1488 aaKnown RBP16.28■□□□□ 0.2
MSH6-215ENST00000622629 BCAR3O75815 825 aa16.28■□□□□ 0.2
MSH6-215ENST00000622629 ATP10BO94823 1461 aa16.28■□□□□ 0.2
MSH6-215ENST00000622629 CABP2Q9NPB3 220 aa16.28■□□□□ 0.2
MSH6-215ENST00000622629 GGNBP2Q9H3C7 697 aa16.27■□□□□ 0.2
MSH6-215ENST00000622629 GOLGA6L22H0YM25 854 aa16.27■□□□□ 0.2
MSH6-215ENST00000622629 DISP1Q96F81 1524 aa16.27■□□□□ 0.19
MSH6-215ENST00000622629 TCP11L2Q8N4U5 519 aa16.27■□□□□ 0.19
MSH6-215ENST00000622629 RUNDC1Q96C34 613 aa16.27■□□□□ 0.19
MSH6-215ENST00000622629 CEP170Q5SW79 1584 aa16.27■□□□□ 0.19
MSH6-215ENST00000622629 GZF1Q9H116 711 aaPredicted RBP16.26■□□□□ 0.19
MSH6-215ENST00000622629 ZKSCAN2Q63HK3 967 aa16.25■□□□□ 0.19
MSH6-215ENST00000622629 C20orf194Q5TEA3 1177 aa16.24■□□□□ 0.19
MSH6-215ENST00000622629 BACH2Q9BYV9 841 aa16.24■□□□□ 0.19
MSH6-215ENST00000622629 KIAA0556O60303 1618 aa16.24■□□□□ 0.19
MSH6-215ENST00000622629 LMOD2Q6P5Q4 547 aa16.23■□□□□ 0.19
MSH6-215ENST00000622629 TRIM44Q96DX7 344 aaPredicted RBP16.23■□□□□ 0.19
MSH6-215ENST00000622629 PLEKHH2Q8IVE3 1493 aa16.23■□□□□ 0.19
MSH6-215ENST00000622629 CD109Q6YHK3 1445 aa16.23■□□□□ 0.19
MSH6-215ENST00000622629 CASC1Q6TDU7 716 aa16.23■□□□□ 0.19
MSH6-215ENST00000622629 HDGFP51858 240 aaKnown RBP16.23■□□□□ 0.19
MSH6-215ENST00000622629 NGEFQ8N5V2 710 aa16.23■□□□□ 0.19
MSH6-215ENST00000622629 KIF14Q15058 1648 aa16.22■□□□□ 0.19
MSH6-215ENST00000622629 RAPGEF6Q8TEU7 1601 aa16.22■□□□□ 0.19
MSH6-215ENST00000622629 TPRNQ4KMQ1 711 aa16.22■□□□□ 0.19
MSH6-215ENST00000622629 MAGI3Q5TCQ9 1506 aa16.22■□□□□ 0.19
MSH6-215ENST00000622629 USP35Q9P2H5 1018 aa16.22■□□□□ 0.19
MSH6-215ENST00000622629 RIPK4P57078 832 aa16.21■□□□□ 0.19
MSH6-215ENST00000622629 CALD1Q05682 793 aaKnown RBP16.21■□□□□ 0.18
MSH6-215ENST00000622629 DISP3Q9P2K9 1392 aa16.2■□□□□ 0.18
MSH6-215ENST00000622629 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.2■□□□□ 0.18
MSH6-215ENST00000622629 DZIP1LQ8IYY4 767 aaKnown RBP16.19■□□□□ 0.18
MSH6-215ENST00000622629 DIAPH1O60610 1272 aaKnown RBP16.19■□□□□ 0.18
MSH6-215ENST00000622629 RTF1Q92541 710 aaKnown RBP16.19■□□□□ 0.18
MSH6-215ENST00000622629 ASXL2Q76L83 1435 aa16.17■□□□□ 0.18
MSH6-215ENST00000622629 FOXD4L1Q9NU39 408 aa16.16■□□□□ 0.18
MSH6-215ENST00000622629 PZPP20742 1482 aa16.16■□□□□ 0.18
MSH6-215ENST00000622629 HMOX1P09601 288 aa16.16■□□□□ 0.18
MSH6-215ENST00000622629 SAMD9Q5K651 1589 aa16.16■□□□□ 0.18
MSH6-215ENST00000622629 DHX29Q7Z478 1369 aaKnown RBP16.16■□□□□ 0.18
MSH6-215ENST00000622629 GSE1Q14687 1217 aa16.15■□□□□ 0.18
MSH6-215ENST00000622629 SLFN5Q08AF3 891 aa16.15■□□□□ 0.18
MSH6-215ENST00000622629 ANKRD45Q5TZF3 282 aa16.15■□□□□ 0.18
MSH6-215ENST00000622629 HAP1P54257 671 aaPredicted RBP16.15■□□□□ 0.18
MSH6-215ENST00000622629 ADGRF5Q8IZF2 1346 aa16.14■□□□□ 0.17
MSH6-215ENST00000622629 TSR2Q969E8 191 aaKnown RBP16.14■□□□□ 0.17
MSH6-215ENST00000622629 NFKBIBQ15653 356 aa16.14■□□□□ 0.17
MSH6-215ENST00000622629 SLC4A10Q6U841 1118 aa16.14■□□□□ 0.17
MSH6-215ENST00000622629 RALGAPBQ86X10 1494 aa16.14■□□□□ 0.17
MSH6-215ENST00000622629 DDX19BQ9UMR2 479 aa16.13■□□□□ 0.17
MSH6-215ENST00000622629 TEX14Q8IWB6 1497 aa16.12■□□□□ 0.17
MSH6-215ENST00000622629 EXOSC9Q06265 439 aaKnown RBP16.11■□□□□ 0.17
MSH6-215ENST00000622629 PDE3AQ14432 1141 aa16.11■□□□□ 0.17
MSH6-215ENST00000622629 TESK2Q96S53 571 aa16.11■□□□□ 0.17
MSH6-215ENST00000622629 L1TD1Q5T7N2 865 aaKnown RBP16.11■□□□□ 0.17
MSH6-215ENST00000622629 COG3Q96JB2 828 aa16.11■□□□□ 0.17
MSH6-215ENST00000622629 LNPKQ9C0E8 428 aa16.11■□□□□ 0.17
MSH6-215ENST00000622629 DUSP27Q5VZP5 1158 aa16.11■□□□□ 0.17
MSH6-215ENST00000622629 PRAM1Q96QH2 718 aa16.11■□□□□ 0.17
MSH6-215ENST00000622629 WWC1Q8IX03 1113 aa16.1■□□□□ 0.17
MSH6-215ENST00000622629 OS9Q13438 667 aaPredicted RBP16.1■□□□□ 0.17
MSH6-215ENST00000622629 ANO8Q9HCE9 1232 aaPredicted RBP16.1■□□□□ 0.17
MSH6-215ENST00000622629 LMOD3Q0VAK6 560 aa16.09■□□□□ 0.17
MSH6-215ENST00000622629 ADGRL1O94910 1474 aa16.09■□□□□ 0.17
MSH6-215ENST00000622629 NGDNQ8NEJ9 315 aaKnown RBP16.09■□□□□ 0.17
MSH6-215ENST00000622629 KDM6BO15054 1643 aa16.08■□□□□ 0.17
MSH6-215ENST00000622629 PRAG1Q86YV5 1406 aa16.08■□□□□ 0.17
MSH6-215ENST00000622629 LTV1Q96GA3 475 aaPredicted RBP16.08■□□□□ 0.16
MSH6-215ENST00000622629 PDZRN3Q9UPQ7 1066 aa16.08■□□□□ 0.16
MSH6-215ENST00000622629 FANCAO15360 1455 aa16.08■□□□□ 0.16
MSH6-215ENST00000622629 PER1O15534 1290 aaPredicted RBP16.08■□□□□ 0.16
MSH6-215ENST00000622629 DNMT1P26358 1616 aaKnown RBP16.08■□□□□ 0.16
MSH6-215ENST00000622629 NAP1L5Q96NT1 182 aaPredicted RBP16.08■□□□□ 0.16
MSH6-215ENST00000622629 CHD1O14646 1710 aa16.07■□□□□ 0.16
MSH6-215ENST00000622629 NSD3Q9BZ95 1437 aa16.07■□□□□ 0.16
MSH6-215ENST00000622629 ERCC6L2Q5T890 1561 aa16.07■□□□□ 0.16
MSH6-215ENST00000622629 AMPHP49418 695 aa16.06■□□□□ 0.16
MSH6-215ENST00000622629 AMER1Q5JTC6 1135 aaPredicted RBP16.06■□□□□ 0.16
MSH6-215ENST00000622629 GBP4Q96PP9 640 aa16.06■□□□□ 0.16
MSH6-215ENST00000622629 STK31Q9BXU1 1019 aa16.06■□□□□ 0.16
MSH6-215ENST00000622629 PARD3Q8TEW0 1356 aa16.06■□□□□ 0.16
MSH6-215ENST00000622629 FRAT2O75474 233 aaPredicted RBP16.05■□□□□ 0.16
MSH6-215ENST00000622629 PRKAR2BP31323 418 aa16.05■□□□□ 0.16
MSH6-215ENST00000622629 CABP1Q9NZU7 370 aa16.05■□□□□ 0.16
MSH6-215ENST00000622629 SYCP2Q9BX26 1530 aa16.05■□□□□ 0.16
MSH6-215ENST00000622629 ITSN2Q9NZM3 1697 aa16.05■□□□□ 0.16
MSH6-215ENST00000622629 FAM135AQ9P2D6 1515 aa16.05■□□□□ 0.16
MSH6-215ENST00000622629 WDR7Q9Y4E6 1490 aa16.04■□□□□ 0.16
MSH6-215ENST00000622629 ABCC2Q92887 1545 aa16.04■□□□□ 0.16
MSH6-215ENST00000622629 SPATA31E1Q6ZUB1 1445 aa16.04■□□□□ 0.16
MSH6-215ENST00000622629 GOLGA6L3A6NEY3 463 aa16.03■□□□□ 0.16
MSH6-215ENST00000622629 KIF16BQ96L93 1317 aa16.03■□□□□ 0.16
MSH6-215ENST00000622629 PTMAP06454 111 aaKnown RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms