RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 KCNC4Q03721 635 aa12.95□□□□□ -0.34
VPS29-212ENST00000621131 NECTIN2Q92692 538 aa12.95□□□□□ -0.34
VPS29-212ENST00000621131 SLC4A3P48751 1232 aa12.94□□□□□ -0.34
VPS29-212ENST00000621131 TJAP1Q5JTD0 557 aa12.94□□□□□ -0.34
VPS29-212ENST00000621131 PHOX2BQ99453 314 aa12.92□□□□□ -0.34
VPS29-212ENST00000621131 A0A0G2JS52 829 aa12.91□□□□□ -0.34
VPS29-212ENST00000621131 MTRQ99707 1265 aa12.9□□□□□ -0.34
VPS29-212ENST00000621131 SLC10A3P09131 477 aa12.89□□□□□ -0.35
VPS29-212ENST00000621131 LMOD2Q6P5Q4 547 aa12.89□□□□□ -0.35
VPS29-212ENST00000621131 MAP2K5Q13163 448 aa12.88□□□□□ -0.35
VPS29-212ENST00000621131 IL21Q9HBE4 155 aa12.87□□□□□ -0.35
VPS29-212ENST00000621131 DAXXQ9UER7 740 aaPredicted RBP12.87□□□□□ -0.35
VPS29-212ENST00000621131 IRF6O14896 467 aa12.86□□□□□ -0.35
VPS29-212ENST00000621131 NLRP7Q8WX94 980 aa12.86□□□□□ -0.35
VPS29-212ENST00000621131 ZNF516Q92618 1163 aa12.85□□□□□ -0.35
VPS29-212ENST00000621131 PRR14Q9BWN1 585 aa12.85□□□□□ -0.35
VPS29-212ENST00000621131 MINK1Q8N4C8 1332 aaPredicted RBP12.85□□□□□ -0.35
VPS29-212ENST00000621131 ACTN4O43707 911 aaKnown RBP12.82□□□□□ -0.36
VPS29-212ENST00000621131 RGS20O76081 388 aa12.81□□□□□ -0.36
VPS29-212ENST00000621131 CFHP08603 1231 aa12.81□□□□□ -0.36
VPS29-212ENST00000621131 COPS2P61201 443 aa12.81□□□□□ -0.36
VPS29-212ENST00000621131 KMT5BQ4FZB7 885 aa12.81□□□□□ -0.36
VPS29-212ENST00000621131 PCDHB3Q9Y5E6 796 aa12.8□□□□□ -0.36
VPS29-212ENST00000621131 RSPH4AQ5TD94 716 aa12.79□□□□□ -0.36
VPS29-212ENST00000621131 BLOC1S3Q6QNY0 202 aa12.78□□□□□ -0.36
VPS29-212ENST00000621131 ZC3H15Q8WU90 426 aaKnown RBP12.78□□□□□ -0.36
VPS29-212ENST00000621131 DDX11L8A8MPP1 907 aa12.77□□□□□ -0.37
VPS29-212ENST00000621131 ZMYND10O75800 440 aa12.77□□□□□ -0.37
VPS29-212ENST00000621131 BARGINQ6ZT62 677 aa12.77□□□□□ -0.37
VPS29-212ENST00000621131 NKX2-3Q8TAU0 364 aa12.77□□□□□ -0.37
VPS29-212ENST00000621131 CCDC102AQ96A19 550 aa12.77□□□□□ -0.37
VPS29-212ENST00000621131 ZPR1O75312 459 aa12.76□□□□□ -0.37
VPS29-212ENST00000621131 SLC24A1O60721 1099 aa12.74□□□□□ -0.37
VPS29-212ENST00000621131 RDH13Q8NBN7 331 aa12.74□□□□□ -0.37
VPS29-212ENST00000621131 SULF1Q8IWU6 871 aa12.73□□□□□ -0.37
VPS29-212ENST00000621131 PPP1R18Q6NYC8 613 aa12.72□□□□□ -0.37
VPS29-212ENST00000621131 GCGRP47871 477 aa12.71□□□□□ -0.37
VPS29-212ENST00000621131 MDM2Q00987 491 aaPredicted RBP12.7□□□□□ -0.38
VPS29-212ENST00000621131 KRI1Q8N9T8 703 aaKnown RBP12.7□□□□□ -0.38
VPS29-212ENST00000621131 PUS10Q3MIT2 529 aaKnown RBP12.68□□□□□ -0.38
VPS29-212ENST00000621131 SCUBE3Q8IX30 993 aa12.68□□□□□ -0.38
VPS29-212ENST00000621131 TMUB1Q9BVT8 246 aa12.68□□□□□ -0.38
VPS29-212ENST00000621131 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.68□□□□□ -0.38
VPS29-212ENST00000621131 CD46P15529 392 aa12.67□□□□□ -0.38
VPS29-212ENST00000621131 NR1I2O75469 434 aa12.66□□□□□ -0.38
VPS29-212ENST00000621131 FUT2Q10981 343 aa12.66□□□□□ -0.38
VPS29-212ENST00000621131 TLL1O43897 1013 aa12.65□□□□□ -0.38
VPS29-212ENST00000621131 MORN1Q5T089 497 aa12.65□□□□□ -0.38
VPS29-212ENST00000621131 ATP6V1AP38606 617 aa12.64□□□□□ -0.39
VPS29-212ENST00000621131 GPCPD1Q9NPB8 672 aa12.64□□□□□ -0.39
VPS29-212ENST00000621131 CLCN1P35523 988 aa12.63□□□□□ -0.39
VPS29-212ENST00000621131 REPIN1Q9BWE0 567 aaKnown RBP12.63□□□□□ -0.39
VPS29-212ENST00000621131 FAM217BQ9NTX9 383 aaPredicted RBP12.61□□□□□ -0.39
VPS29-212ENST00000621131 GGCXP38435 758 aa12.6□□□□□ -0.39
VPS29-212ENST00000621131 ADH1BP00325 375 aa12.59□□□□□ -0.39
VPS29-212ENST00000621131 SLC27A5Q9Y2P5 690 aa12.59□□□□□ -0.39
VPS29-212ENST00000621131 AMHR2Q16671 573 aa12.58□□□□□ -0.4
VPS29-212ENST00000621131 THAP11Q96EK4 314 aa12.58□□□□□ -0.4
VPS29-212ENST00000621131 RNF223E7ERA6 249 aa12.57□□□□□ -0.4
VPS29-212ENST00000621131 PRKD2Q9BZL6 878 aa12.57□□□□□ -0.4
VPS29-212ENST00000621131 KDM4AO75164 1064 aa12.56□□□□□ -0.4
VPS29-212ENST00000621131 S1PR4O95977 384 aa12.56□□□□□ -0.4
VPS29-212ENST00000621131 BCANQ96GW7 911 aa12.56□□□□□ -0.4
VPS29-212ENST00000621131 SPSB2Q99619 263 aa12.56□□□□□ -0.4
VPS29-212ENST00000621131 GRIPAP1Q4V328 841 aa12.55□□□□□ -0.4
VPS29-212ENST00000621131 TRIM66O15016 1216 aa12.54□□□□□ -0.4
VPS29-212ENST00000621131 SSTR3P32745 418 aaPredicted RBP12.54□□□□□ -0.4
VPS29-212ENST00000621131 AK7Q96M32 723 aa12.54□□□□□ -0.4
VPS29-212ENST00000621131 SLC6A16Q9GZN6 736 aa12.54□□□□□ -0.4
VPS29-212ENST00000621131 SALL2Q9Y467 1007 aaPredicted RBP12.54□□□□□ -0.4
VPS29-212ENST00000621131 V9GY48 417 aaPredicted RBP12.54□□□□□ -0.4
VPS29-212ENST00000621131 PPEF1O14829 653 aaPredicted RBP12.53□□□□□ -0.4
VPS29-212ENST00000621131 BRICD5Q6PL45 260 aa12.53□□□□□ -0.4
VPS29-212ENST00000621131 FMNL1O95466 1100 aaPredicted RBP12.52□□□□□ -0.41
VPS29-212ENST00000621131 FAM160A2Q8N612 972 aaPredicted RBP12.52□□□□□ -0.41
VPS29-212ENST00000621131 IRX2Q9BZI1 471 aaPredicted RBP12.52□□□□□ -0.41
VPS29-212ENST00000621131 USP46P62068 366 aa12.51□□□□□ -0.41
VPS29-212ENST00000621131 ANKLE1Q8NAG6 615 aa12.51□□□□□ -0.41
VPS29-212ENST00000621131 TTLL12Q14166 644 aaPredicted RBP12.5□□□□□ -0.41
VPS29-212ENST00000621131 EMID1Q96A84 441 aaPredicted RBP12.5□□□□□ -0.41
VPS29-212ENST00000621131 RNF19BQ6ZMZ0 732 aa12.49□□□□□ -0.41
VPS29-212ENST00000621131 HLA-CQ95604 372 aa12.49□□□□□ -0.41
VPS29-212ENST00000621131 SLC24A3Q9HC58 644 aa12.49□□□□□ -0.41
VPS29-212ENST00000621131 HOXA2O43364 376 aa12.48□□□□□ -0.41
VPS29-212ENST00000621131 GIGYF2Q6Y7W6 1299 aaKnown RBP12.48□□□□□ -0.41
VPS29-212ENST00000621131 PARP9Q8IXQ6 854 aa12.46□□□□□ -0.41
VPS29-212ENST00000621131 SLC19A1P41440 591 aa12.45□□□□□ -0.42
VPS29-212ENST00000621131 Q3C1V9 767 aa12.45□□□□□ -0.42
VPS29-212ENST00000621131 NUTM1Q86Y26 1132 aa12.45□□□□□ -0.42
VPS29-212ENST00000621131 SPIRE2Q8WWL2 714 aa12.44□□□□□ -0.42
VPS29-212ENST00000621131 GUCA2AQ02747 115 aa12.43□□□□□ -0.42
VPS29-212ENST00000621131 MSS51Q4VC12 460 aa12.43□□□□□ -0.42
VPS29-212ENST00000621131 PLA2G2CQ5R387 149 aa12.43□□□□□ -0.42
VPS29-212ENST00000621131 LIAT1Q6ZQX7 453 aa12.43□□□□□ -0.42
VPS29-212ENST00000621131 PDE4DQ08499 809 aa12.42□□□□□ -0.42
VPS29-212ENST00000621131 MS4A1P11836 297 aa12.41□□□□□ -0.42
VPS29-212ENST00000621131 BEGAINQ9BUH8 593 aa12.41□□□□□ -0.42
VPS29-212ENST00000621131 PRDM9Q9NQV7 894 aa12.41□□□□□ -0.42
VPS29-212ENST00000621131 SPRYD7Q5W111 196 aa12.4□□□□□ -0.42
VPS29-212ENST00000621131 USB1Q9BQ65 265 aaKnown RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms