RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 U2SURPO15042 1029 aaKnown RBP20.91■□□□□ 0.94
CPSF1-213ENST00000620219 RPGRIP1LQ68CZ1 1315 aa20.9■□□□□ 0.94
CPSF1-213ENST00000620219 UGGT1Q9NYU2 1555 aa20.9■□□□□ 0.94
CPSF1-213ENST00000620219 SPATA31E1Q6ZUB1 1445 aa20.9■□□□□ 0.94
CPSF1-213ENST00000620219 HDGFL2Q7Z4V5 671 aaPredicted RBP20.9■□□□□ 0.94
CPSF1-213ENST00000620219 DISP3Q9P2K9 1392 aa20.9■□□□□ 0.94
CPSF1-213ENST00000620219 NPATQ14207 1427 aa20.89■□□□□ 0.94
CPSF1-213ENST00000620219 CFAP53Q96M91 514 aa20.89■□□□□ 0.93
CPSF1-213ENST00000620219 ARAP3Q8WWN8 1544 aa20.89■□□□□ 0.93
CPSF1-213ENST00000620219 MLH3Q9UHC1 1453 aa20.88■□□□□ 0.93
CPSF1-213ENST00000620219 LMOD2Q6P5Q4 547 aa20.88■□□□□ 0.93
CPSF1-213ENST00000620219 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.88■□□□□ 0.93
CPSF1-213ENST00000620219 ATP10AO60312 1499 aa20.88■□□□□ 0.93
CPSF1-213ENST00000620219 WAPLQ7Z5K2 1190 aa20.88■□□□□ 0.93
CPSF1-213ENST00000620219 CCDC146Q8IYE0 955 aa20.87■□□□□ 0.93
CPSF1-213ENST00000620219 PLXNC1O60486 1568 aa20.86■□□□□ 0.93
CPSF1-213ENST00000620219 C14orf93Q9H972 538 aaKnown RBP20.85■□□□□ 0.93
CPSF1-213ENST00000620219 TERF2IPQ9NYB0 399 aa20.85■□□□□ 0.93
CPSF1-213ENST00000620219 CANXP27824 592 aaKnown RBP20.84■□□□□ 0.93
CPSF1-213ENST00000620219 UHRF1BP1Q6BDS2 1440 aa20.84■□□□□ 0.93
CPSF1-213ENST00000620219 KDM5DQ9BY66 1539 aa20.84■□□□□ 0.93
CPSF1-213ENST00000620219 TESK2Q96S53 571 aa20.84■□□□□ 0.93
CPSF1-213ENST00000620219 CFAP74Q9C0B2 1584 aa20.82■□□□□ 0.92
CPSF1-213ENST00000620219 HECW2Q9P2P5 1572 aa20.82■□□□□ 0.92
CPSF1-213ENST00000620219 GGNBP2Q9H3C7 697 aa20.81■□□□□ 0.92
CPSF1-213ENST00000620219 ZMYM3Q14202 1370 aa20.81■□□□□ 0.92
CPSF1-213ENST00000620219 PAK3O75914 559 aaPredicted RBP20.79■□□□□ 0.92
CPSF1-213ENST00000620219 PPP6R1Q9UPN7 881 aa20.79■□□□□ 0.92
CPSF1-213ENST00000620219 SCAF11Q99590 1463 aaKnown RBP20.79■□□□□ 0.92
CPSF1-213ENST00000620219 U2AF1L5P0DN76 240 aaPredicted RBP20.78■□□□□ 0.92
CPSF1-213ENST00000620219 U2AF1Q01081 240 aaKnown RBP eCLIP20.78■□□□□ 0.92
CPSF1-213ENST00000620219 THEMISQ8N1K5 641 aaPredicted RBP20.78■□□□□ 0.92
CPSF1-213ENST00000620219 CDK19Q9BWU1 502 aa20.77■□□□□ 0.92
CPSF1-213ENST00000620219 CGNL1Q0VF96 1302 aa20.77■□□□□ 0.91
CPSF1-213ENST00000620219 NGDNQ8NEJ9 315 aaKnown RBP20.76■□□□□ 0.91
CPSF1-213ENST00000620219 PRDM15P57071 1507 aaPredicted RBP20.76■□□□□ 0.91
CPSF1-213ENST00000620219 RBM33Q96EV2 1170 aaKnown RBP20.76■□□□□ 0.91
CPSF1-213ENST00000620219 CABP1Q9NZU7 370 aa20.76■□□□□ 0.91
CPSF1-213ENST00000620219 UNC13BO14795 1591 aa20.76■□□□□ 0.91
CPSF1-213ENST00000620219 IQGAP3Q86VI3 1631 aa20.75■□□□□ 0.91
CPSF1-213ENST00000620219 NUDCQ9Y266 331 aa20.75■□□□□ 0.91
CPSF1-213ENST00000620219 PNISRQ8TF01 805 aaKnown RBP20.74■□□□□ 0.91
CPSF1-213ENST00000620219 TNRQ92752 1358 aa20.74■□□□□ 0.91
CPSF1-213ENST00000620219 RRP7AQ9Y3A4 280 aaKnown RBP20.73■□□□□ 0.91
CPSF1-213ENST00000620219 ZBED9Q6R2W3 1325 aa20.73■□□□□ 0.91
CPSF1-213ENST00000620219 B4GALNT3Q6L9W6 998 aa20.72■□□□□ 0.91
CPSF1-213ENST00000620219 KDM5CP41229 1560 aa20.72■□□□□ 0.91
CPSF1-213ENST00000620219 PPP2R1AP30153 589 aa20.72■□□□□ 0.91
CPSF1-213ENST00000620219 BCORL1Q5H9F3 1711 aa20.72■□□□□ 0.91
CPSF1-213ENST00000620219 BCL11AQ9H165 835 aa20.71■□□□□ 0.91
CPSF1-213ENST00000620219 MAPK8IP3Q9UPT6 1336 aa20.7■□□□□ 0.9
CPSF1-213ENST00000620219 PTPRTO14522 1441 aa20.7■□□□□ 0.9
CPSF1-213ENST00000620219 ADAMTS8Q9UP79 889 aa20.7■□□□□ 0.9
CPSF1-213ENST00000620219 KIDINS220Q9ULH0 1771 aa20.69■□□□□ 0.9
CPSF1-213ENST00000620219 LAS1LQ9Y4W2 734 aaKnown RBP20.69■□□□□ 0.9
CPSF1-213ENST00000620219 PMFBP1Q8TBY8 1022 aa20.68■□□□□ 0.9
CPSF1-213ENST00000620219 INO80Q9ULG1 1556 aaPredicted RBP20.68■□□□□ 0.9
CPSF1-213ENST00000620219 TRPM2O94759 1503 aa20.67■□□□□ 0.9
CPSF1-213ENST00000620219 E9PCH4 1651 aa20.67■□□□□ 0.9
CPSF1-213ENST00000620219 MTHFSP49914 203 aa20.67■□□□□ 0.9
CPSF1-213ENST00000620219 CCDC136Q96JN2 1154 aa20.67■□□□□ 0.9
CPSF1-213ENST00000620219 APAF1O14727 1248 aa20.66■□□□□ 0.9
CPSF1-213ENST00000620219 RIMS2Q9UQ26 1411 aa20.66■□□□□ 0.9
CPSF1-213ENST00000620219 ABCC3O15438 1527 aa20.66■□□□□ 0.9
CPSF1-213ENST00000620219 BRD4O60885 1362 aaPredicted RBP20.64■□□□□ 0.9
CPSF1-213ENST00000620219 PER1O15534 1290 aaPredicted RBP20.64■□□□□ 0.89
CPSF1-213ENST00000620219 NUTM2GQ5VZR2 741 aa20.64■□□□□ 0.89
CPSF1-213ENST00000620219 CLTCL1P53675 1640 aa20.64■□□□□ 0.89
CPSF1-213ENST00000620219 TET3O43151 1660 aa20.63■□□□□ 0.89
CPSF1-213ENST00000620219 COL17A1Q9UMD9 1497 aaPredicted RBP20.63■□□□□ 0.89
CPSF1-213ENST00000620219 EFCAB6Q5THR3 1501 aa20.63■□□□□ 0.89
CPSF1-213ENST00000620219 GPRASP1Q5JY77 1395 aa20.63■□□□□ 0.89
CPSF1-213ENST00000620219 CDCA7LQ96GN5 454 aa20.63■□□□□ 0.89
CPSF1-213ENST00000620219 NSD3Q9BZ95 1437 aa20.63■□□□□ 0.89
CPSF1-213ENST00000620219 ANKLE2Q86XL3 938 aa20.63■□□□□ 0.89
CPSF1-213ENST00000620219 DIP2BQ9P265 1576 aa20.62■□□□□ 0.89
CPSF1-213ENST00000620219 MAGI2Q86UL8 1455 aa20.61■□□□□ 0.89
CPSF1-213ENST00000620219 AMOTL2Q9Y2J4 779 aa20.61■□□□□ 0.89
CPSF1-213ENST00000620219 ABCA6Q8N139 1617 aa20.61■□□□□ 0.89
CPSF1-213ENST00000620219 DNAJC5Q9H3Z4 198 aa20.61■□□□□ 0.89
CPSF1-213ENST00000620219 EIF2AK4Q9P2K8 1649 aaKnown RBP20.61■□□□□ 0.89
CPSF1-213ENST00000620219 COG3Q96JB2 828 aa20.6■□□□□ 0.89
CPSF1-213ENST00000620219 CEP152O94986 1710 aa20.6■□□□□ 0.89
CPSF1-213ENST00000620219 DIP2CQ9Y2E4 1556 aa20.59■□□□□ 0.89
CPSF1-213ENST00000620219 NUDT16Q96DE0 195 aaKnown RBP20.59■□□□□ 0.89
CPSF1-213ENST00000620219 LTV1Q96GA3 475 aaPredicted RBP20.58■□□□□ 0.88
CPSF1-213ENST00000620219 FBLN1P23142 703 aa20.57■□□□□ 0.88
CPSF1-213ENST00000620219 FRAT1Q92837 279 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-213ENST00000620219 CARD14Q9BXL6 1004 aa20.57■□□□□ 0.88
CPSF1-213ENST00000620219 NCKAP5LQ9HCH0 1330 aa20.57■□□□□ 0.88
CPSF1-213ENST00000620219 RCAN3Q9UKA8 241 aa20.56■□□□□ 0.88
CPSF1-213ENST00000620219 SPHKAPQ2M3C7 1700 aa20.56■□□□□ 0.88
CPSF1-213ENST00000620219 TRPM1Q7Z4N2 1603 aa20.56■□□□□ 0.88
CPSF1-213ENST00000620219 LTKP29376 864 aa20.56■□□□□ 0.88
CPSF1-213ENST00000620219 AMER1Q5JTC6 1135 aaPredicted RBP20.56■□□□□ 0.88
CPSF1-213ENST00000620219 PLIN1O60240 522 aa20.55■□□□□ 0.88
CPSF1-213ENST00000620219 GOLGA2Q08379 1002 aa20.55■□□□□ 0.88
CPSF1-213ENST00000620219 HAP1P54257 671 aaPredicted RBP20.54■□□□□ 0.88
CPSF1-213ENST00000620219 CCDC61Q9Y6R9 512 aa20.54■□□□□ 0.88
CPSF1-213ENST00000620219 WASLO00401 505 aaPredicted RBP20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms