RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 FRAT1Q92837 279 aaPredicted RBP14.23□□□□□ -0.13
UPF3A-212ENST00000619079 BRD4O60885 1362 aaPredicted RBP14.23□□□□□ -0.13
UPF3A-212ENST00000619079 ANKRD50Q9ULJ7 1429 aa14.22□□□□□ -0.13
UPF3A-212ENST00000619079 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.21□□□□□ -0.148e-9■□□□□ 9.1
UPF3A-212ENST00000619079 ESF1Q9H501 851 aaKnown RBP14.21□□□□□ -0.14
UPF3A-212ENST00000619079 ERBINQ96RT1 1412 aa14.2□□□□□ -0.14
UPF3A-212ENST00000619079 REREQ9P2R6 1566 aa14.19□□□□□ -0.14
UPF3A-212ENST00000619079 GLIPR1L2Q4G1C9 344 aa14.18□□□□□ -0.14
UPF3A-212ENST00000619079 USP47Q96K76 1375 aa14.18□□□□□ -0.14
UPF3A-212ENST00000619079 MYBBP1AQ9BQG0 1328 aaKnown RBP14.17□□□□□ -0.14
UPF3A-212ENST00000619079 RALBP1Q15311 655 aa14.17□□□□□ -0.14
UPF3A-212ENST00000619079 AGLP35573 1532 aa14.17□□□□□ -0.14
UPF3A-212ENST00000619079 SIGLEC1Q9BZZ2 1709 aa14.17□□□□□ -0.14
UPF3A-212ENST00000619079 PLPPR3Q6T4P5 718 aa14.15□□□□□ -0.14
UPF3A-212ENST00000619079 BCORL1Q5H9F3 1711 aa14.15□□□□□ -0.14
UPF3A-212ENST00000619079 FOXD1Q16676 465 aa14.14□□□□□ -0.15
UPF3A-212ENST00000619079 KANK1Q14678 1352 aa14.13□□□□□ -0.15
UPF3A-212ENST00000619079 EIF2AK4Q9P2K8 1649 aaKnown RBP14.13□□□□□ -0.15
UPF3A-212ENST00000619079 INSRP06213 1382 aa14.12□□□□□ -0.15
UPF3A-212ENST00000619079 POLR3GLQ9BT43 218 aa14.11□□□□□ -0.15
UPF3A-212ENST00000619079 NUP155O75694 1391 aa14.11□□□□□ -0.15
UPF3A-212ENST00000619079 PKNOX2Q96KN3 472 aa14.11□□□□□ -0.15
UPF3A-212ENST00000619079 CNGB1Q14028 1251 aaPredicted RBP14.1□□□□□ -0.15
UPF3A-212ENST00000619079 FAM161AQ3B820 660 aa14.1□□□□□ -0.15
UPF3A-212ENST00000619079 SLC4A1APQ9BWU0 796 aaKnown RBP14.1□□□□□ -0.15
UPF3A-212ENST00000619079 PPP6R1Q9UPN7 881 aa14.1□□□□□ -0.15
UPF3A-212ENST00000619079 CENPQQ7L2Z9 268 aaPredicted RBP14.09□□□□□ -0.15
UPF3A-212ENST00000619079 KDM4FA0A1W2PPD8 638 aa14.09□□□□□ -0.15
UPF3A-212ENST00000619079 NLRP13Q86W25 1043 aa14.09□□□□□ -0.15
UPF3A-212ENST00000619079 RNF17Q9BXT8 1623 aaKnown RBP14.08□□□□□ -0.16
UPF3A-212ENST00000619079 MADDQ8WXG6 1647 aa14.07□□□□□ -0.16
UPF3A-212ENST00000619079 RALGAPBQ86X10 1494 aa14.07□□□□□ -0.16
UPF3A-212ENST00000619079 FRAT2O75474 233 aaPredicted RBP14.07□□□□□ -0.16
UPF3A-212ENST00000619079 L1TD1Q5T7N2 865 aaKnown RBP14.07□□□□□ -0.16
UPF3A-212ENST00000619079 PRDM15P57071 1507 aaPredicted RBP14.07□□□□□ -0.16
UPF3A-212ENST00000619079 KDM5DQ9BY66 1539 aa14.07□□□□□ -0.16
UPF3A-212ENST00000619079 KDM2BQ8NHM5 1336 aa14.06□□□□□ -0.16
UPF3A-212ENST00000619079 UHRF1BP1Q6BDS2 1440 aa14.06□□□□□ -0.16
UPF3A-212ENST00000619079 SLC4A3P48751 1232 aa14.06□□□□□ -0.16
UPF3A-212ENST00000619079 CRBNQ96SW2 442 aa14.06□□□□□ -0.16
UPF3A-212ENST00000619079 SENP3-EIF4A1A0A087X0R7 540 aa14.05□□□□□ -0.16
UPF3A-212ENST00000619079 CEBPAP49715 358 aaPredicted RBP14.05□□□□□ -0.16
UPF3A-212ENST00000619079 FER1L4A9Z1Z3 1794 aa14.05□□□□□ -0.16
UPF3A-212ENST00000619079 MROH1Q8NDA8 1641 aa14.05□□□□□ -0.16
UPF3A-212ENST00000619079 DCAF11Q8TEB1 546 aa14.05□□□□□ -0.16
UPF3A-212ENST00000619079 DEPDC5O75140 1603 aa14.05□□□□□ -0.16
UPF3A-212ENST00000619079 ADAMTSL3P82987 1691 aa14.04□□□□□ -0.16
UPF3A-212ENST00000619079 ZMYM3Q14202 1370 aa14.04□□□□□ -0.16
UPF3A-212ENST00000619079 E9PCH4 1651 aa14.04□□□□□ -0.16
UPF3A-212ENST00000619079 UNC13BO14795 1591 aa14.04□□□□□ -0.16
UPF3A-212ENST00000619079 ABCC3O15438 1527 aa14.04□□□□□ -0.16
UPF3A-212ENST00000619079 CLTCQ00610 1675 aaKnown RBP14.04□□□□□ -0.16
UPF3A-212ENST00000619079 RIMS1Q86UR5 1692 aaKnown RBP14.04□□□□□ -0.16
UPF3A-212ENST00000619079 C8orf34Q49A92 452 aa14.03□□□□□ -0.16
UPF3A-212ENST00000619079 PARD3Q8TEW0 1356 aa14.03□□□□□ -0.16
UPF3A-212ENST00000619079 PZPP20742 1482 aa14.02□□□□□ -0.16
UPF3A-212ENST00000619079 FAM135AQ9P2D6 1515 aa14.02□□□□□ -0.17
UPF3A-212ENST00000619079 BLMP54132 1417 aaPredicted RBP14.01□□□□□ -0.17
UPF3A-212ENST00000619079 PTPRMP28827 1452 aa14.01□□□□□ -0.17
UPF3A-212ENST00000619079 CEP152O94986 1710 aa14.01□□□□□ -0.17
UPF3A-212ENST00000619079 PLIN1O60240 522 aa14□□□□□ -0.17
UPF3A-212ENST00000619079 ZC3H13Q5T200 1668 aaKnown RBP14□□□□□ -0.17
UPF3A-212ENST00000619079 PKD2Q13563 968 aa14□□□□□ -0.17
UPF3A-212ENST00000619079 ZNF326Q5BKZ1 582 aaKnown RBP14□□□□□ -0.17
UPF3A-212ENST00000619079 FBXO31Q5XUX0 539 aaPredicted RBP13.99□□□□□ -0.17
UPF3A-212ENST00000619079 CDCA7LQ96GN5 454 aa13.99□□□□□ -0.17
UPF3A-212ENST00000619079 CARD11Q9BXL7 1154 aa13.99□□□□□ -0.17
UPF3A-212ENST00000619079 VWDEQ8N2E2 1590 aa13.99□□□□□ -0.17
UPF3A-212ENST00000619079 IQGAP3Q86VI3 1631 aa13.99□□□□□ -0.17
UPF3A-212ENST00000619079 LMTK2Q8IWU2 1503 aa13.98□□□□□ -0.17
UPF3A-212ENST00000619079 NPATQ14207 1427 aa13.98□□□□□ -0.17
UPF3A-212ENST00000619079 BECN1Q14457 450 aa13.98□□□□□ -0.17
UPF3A-212ENST00000619079 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.98□□□□□ -0.17
UPF3A-212ENST00000619079 CAMSAP1Q5T5Y3 1602 aa13.97□□□□□ -0.17
UPF3A-212ENST00000619079 RRP9O43818 475 aaKnown RBP13.97□□□□□ -0.17
UPF3A-212ENST00000619079 SKAP1Q86WV1 359 aa13.97□□□□□ -0.17
UPF3A-212ENST00000619079 EFCAB6Q5THR3 1501 aa13.97□□□□□ -0.17
UPF3A-212ENST00000619079 RRAGDQ9NQL2 400 aaPredicted RBP13.96□□□□□ -0.17
UPF3A-212ENST00000619079 MROH2AA6NES4 1674 aa13.96□□□□□ -0.18
UPF3A-212ENST00000619079 TET3O43151 1660 aa13.96□□□□□ -0.18
UPF3A-212ENST00000619079 ARHGAP31Q2M1Z3 1444 aa13.95□□□□□ -0.18
UPF3A-212ENST00000619079 C3P01024 1663 aa13.95□□□□□ -0.18
UPF3A-212ENST00000619079 PNNQ9H307 717 aaKnown RBP13.94□□□□□ -0.18
UPF3A-212ENST00000619079 POGKQ9P215 609 aa13.93□□□□□ -0.18
UPF3A-212ENST00000619079 EIF3AQ14152 1382 aaKnown RBP13.93□□□□□ -0.18
UPF3A-212ENST00000619079 TNRQ92752 1358 aa13.93□□□□□ -0.18
UPF3A-212ENST00000619079 ST20-MTHFSA0A0A6YYL1 179 aa13.93□□□□□ -0.18
UPF3A-212ENST00000619079 CLCN1P35523 988 aa13.93□□□□□ -0.18
UPF3A-212ENST00000619079 HSP90AA2PQ14568 343 aaPredicted RBP13.93□□□□□ -0.18
UPF3A-212ENST00000619079 HSP90AA1P07900 732 aaKnown RBP13.92□□□□□ -0.18
UPF3A-212ENST00000619079 VIRMAQ69YN4 1812 aaKnown RBP13.92□□□□□ -0.18
UPF3A-212ENST00000619079 ERVK-7P63135 1459 aa13.92□□□□□ -0.18
UPF3A-212ENST00000619079 CFAP65Q6ZU64 1925 aaKnown RBP13.92□□□□□ -0.18
UPF3A-212ENST00000619079 NAP1L5Q96NT1 182 aaPredicted RBP13.91□□□□□ -0.18
UPF3A-212ENST00000619079 C20orf194Q5TEA3 1177 aa13.91□□□□□ -0.18
UPF3A-212ENST00000619079 VSIG10Q8N0Z9 540 aa13.91□□□□□ -0.18
UPF3A-212ENST00000619079 STAG3Q9UJ98 1225 aa13.91□□□□□ -0.18
UPF3A-212ENST00000619079 ZMYND15Q9H091 742 aa13.9□□□□□ -0.18
UPF3A-212ENST00000619079 CHGAP10645 457 aaKnown RBP13.9□□□□□ -0.18
UPF3A-212ENST00000619079 GOLGA6L3A6NEY3 463 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms