RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PTGDRQ13258 359 aa10.24□□□□□ -0.77
LINC00540-201ENST00000611481 KCNV2Q8TDN2 545 aa10.24□□□□□ -0.77
LINC00540-201ENST00000611481 PCDHB3Q9Y5E6 796 aa10.24□□□□□ -0.77
LINC00540-201ENST00000611481 RBM46Q8TBY0 533 aaKnown RBP10.23□□□□□ -0.77
LINC00540-201ENST00000611481 PDZRN3Q9UPQ7 1066 aa10.22□□□□□ -0.77
LINC00540-201ENST00000611481 TMEM134Q9H6X4 195 aa10.2□□□□□ -0.78
LINC00540-201ENST00000611481 ADGRG1Q9Y653 693 aa10.2□□□□□ -0.78
LINC00540-201ENST00000611481 NUTM2FA1L443 756 aa10.19□□□□□ -0.78
LINC00540-201ENST00000611481 BLOC1S3Q6QNY0 202 aa10.19□□□□□ -0.78
LINC00540-201ENST00000611481 KMT5BQ4FZB7 885 aa10.18□□□□□ -0.78
LINC00540-201ENST00000611481 RB1CC1Q8TDY2 1594 aa10.18□□□□□ -0.78
LINC00540-201ENST00000611481 RCCD1A6NED2 376 aa10.17□□□□□ -0.78
LINC00540-201ENST00000611481 RNF223E7ERA6 249 aa10.15□□□□□ -0.78
LINC00540-201ENST00000611481 ACTN4O43707 911 aaKnown RBP10.15□□□□□ -0.78
LINC00540-201ENST00000611481 FCHSD2O94868 740 aa10.14□□□□□ -0.79
LINC00540-201ENST00000611481 SLC19A1P41440 591 aa10.14□□□□□ -0.79
LINC00540-201ENST00000611481 P3H3Q8IVL6 736 aa10.14□□□□□ -0.79
LINC00540-201ENST00000611481 CFHP08603 1231 aa10.13□□□□□ -0.79
LINC00540-201ENST00000611481 FAM161AQ3B820 660 aa10.13□□□□□ -0.79
LINC00540-201ENST00000611481 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.12□□□□□ -0.79
LINC00540-201ENST00000611481 TLL1O43897 1013 aa10.12□□□□□ -0.79
LINC00540-201ENST00000611481 ANKLE1Q8NAG6 615 aa10.11□□□□□ -0.79
LINC00540-201ENST00000611481 NR1I2O75469 434 aa10.1□□□□□ -0.79
LINC00540-201ENST00000611481 OATP04181 439 aa10.1□□□□□ -0.79
LINC00540-201ENST00000611481 ZNF787Q6DD87 383 aa10.1□□□□□ -0.79
LINC00540-201ENST00000611481 S1PR4O95977 384 aa10.09□□□□□ -0.79
LINC00540-201ENST00000611481 SLC10A3P09131 477 aa10.09□□□□□ -0.79
LINC00540-201ENST00000611481 SEMA3EO15041 775 aa10.08□□□□□ -0.8
LINC00540-201ENST00000611481 SPRYD7Q5W111 196 aa10.08□□□□□ -0.8
LINC00540-201ENST00000611481 TRIM67Q6ZTA4 783 aa10.08□□□□□ -0.8
LINC00540-201ENST00000611481 ZNF598Q86UK7 904 aaKnown RBP10.08□□□□□ -0.8
LINC00540-201ENST00000611481 EMID1Q96A84 441 aaPredicted RBP10.08□□□□□ -0.8
LINC00540-201ENST00000611481 CECR2Q9BXF3 1484 aa10.07□□□□□ -0.8
LINC00540-201ENST00000611481 ADH1BP00325 375 aa10.07□□□□□ -0.8
LINC00540-201ENST00000611481 RSPH4AQ5TD94 716 aa10.07□□□□□ -0.8
LINC00540-201ENST00000611481 PXYLP1Q8TE99 480 aa10.07□□□□□ -0.8
LINC00540-201ENST00000611481 PPEF1O14829 653 aaPredicted RBP10.06□□□□□ -0.8
LINC00540-201ENST00000611481 PRR20EP86478 221 aa10.04□□□□□ -0.8
LINC00540-201ENST00000611481 PRR20CP86479 221 aa10.04□□□□□ -0.8
LINC00540-201ENST00000611481 PRR20DP86480 221 aa10.04□□□□□ -0.8
LINC00540-201ENST00000611481 PRR20BP86481 221 aa10.04□□□□□ -0.8
LINC00540-201ENST00000611481 PRR20AP86496 221 aa10.04□□□□□ -0.8
LINC00540-201ENST00000611481 HIC1Q14526 733 aa10.04□□□□□ -0.8
LINC00540-201ENST00000611481 PKDCCQ504Y2 493 aa10.04□□□□□ -0.8
LINC00540-201ENST00000611481 LIAT1Q6ZQX7 453 aa10.04□□□□□ -0.8
LINC00540-201ENST00000611481 DGAT1O75907 488 aa10.03□□□□□ -0.8
LINC00540-201ENST00000611481 SCUBE3Q8IX30 993 aa10.03□□□□□ -0.8
LINC00540-201ENST00000611481 SLC6A16Q9GZN6 736 aa10.03□□□□□ -0.8
LINC00540-201ENST00000611481 ZNF697Q5TEC3 545 aa10.02□□□□□ -0.81
LINC00540-201ENST00000611481 METTL3Q86U44 580 aaKnown RBP10.02□□□□□ -0.81
LINC00540-201ENST00000611481 SMYD5Q6GMV2 418 aa10□□□□□ -0.81
LINC00540-201ENST00000611481 MYT1Q01538 1121 aa9.99□□□□□ -0.81
LINC00540-201ENST00000611481 PUS10Q3MIT2 529 aaKnown RBP9.99□□□□□ -0.81
LINC00540-201ENST00000611481 TESPA1A2RU30 521 aaPredicted RBP9.98□□□□□ -0.81
LINC00540-201ENST00000611481 GDF9O60383 454 aa9.98□□□□□ -0.81
LINC00540-201ENST00000611481 SPSB2Q99619 263 aa9.98□□□□□ -0.81
LINC00540-201ENST00000611481 GNPATO15228 680 aa9.97□□□□□ -0.81
LINC00540-201ENST00000611481 RBM26Q5T8P6 1007 aaKnown RBP9.97□□□□□ -0.81
LINC00540-201ENST00000611481 DAXXQ9UER7 740 aaPredicted RBP9.97□□□□□ -0.81
LINC00540-201ENST00000611481 FAM187AA6NFU0 413 aa9.96□□□□□ -0.82
LINC00540-201ENST00000611481 TNFRSF10AO00220 468 aa9.96□□□□□ -0.82
LINC00540-201ENST00000611481 PLA2G2CQ5R387 149 aa9.96□□□□□ -0.82
LINC00540-201ENST00000611481 ZNF775Q96BV0 537 aaPredicted RBP9.96□□□□□ -0.82
LINC00540-201ENST00000611481 CC2D2AQ9P2K1 1620 aa9.96□□□□□ -0.82
LINC00540-201ENST00000611481 RDH13Q8NBN7 331 aa9.95□□□□□ -0.82
LINC00540-201ENST00000611481 UNC13AQ9UPW8 1703 aa9.93□□□□□ -0.82
LINC00540-201ENST00000611481 FECHP22830 423 aa9.93□□□□□ -0.82
LINC00540-201ENST00000611481 LMOD2Q6P5Q4 547 aa9.93□□□□□ -0.82
LINC00540-201ENST00000611481 DDX11L8A8MPP1 907 aa9.92□□□□□ -0.82
LINC00540-201ENST00000611481 MORN1Q5T089 497 aa9.92□□□□□ -0.82
LINC00540-201ENST00000611481 BICRAQ9NZM4 1560 aa9.92□□□□□ -0.82
LINC00540-201ENST00000611481 GPR37O15354 613 aa9.91□□□□□ -0.82
LINC00540-201ENST00000611481 ATP6V1AP38606 617 aa9.91□□□□□ -0.82
LINC00540-201ENST00000611481 RPIAP49247 311 aa9.91□□□□□ -0.82
LINC00540-201ENST00000611481 FUT2Q10981 343 aa9.91□□□□□ -0.82
LINC00540-201ENST00000611481 NACADO15069 1562 aa9.91□□□□□ -0.82
LINC00540-201ENST00000611481 SULF1Q8IWU6 871 aa9.9□□□□□ -0.82
LINC00540-201ENST00000611481 PKD2L1Q9P0L9 805 aa9.9□□□□□ -0.82
LINC00540-201ENST00000611481 FMNL1O95466 1100 aaPredicted RBP9.89□□□□□ -0.83
LINC00540-201ENST00000611481 FOXC1Q12948 553 aa9.89□□□□□ -0.83
LINC00540-201ENST00000611481 THAP11Q96EK4 314 aa9.89□□□□□ -0.83
LINC00540-201ENST00000611481 CD2BP2O95400 341 aaKnown RBP9.88□□□□□ -0.83
LINC00540-201ENST00000611481 GCGRP47871 477 aa9.88□□□□□ -0.83
LINC00540-201ENST00000611481 NLRP7Q8WX94 980 aa9.88□□□□□ -0.83
LINC00540-201ENST00000611481 SLC27A5Q9Y2P5 690 aa9.88□□□□□ -0.83
LINC00540-201ENST00000611481 FCF1Q9Y324 198 aaKnown RBP9.88□□□□□ -0.83
LINC00540-201ENST00000611481 POTECB2RU33 542 aa9.87□□□□□ -0.83
LINC00540-201ENST00000611481 SALL2Q9Y467 1007 aaPredicted RBP9.87□□□□□ -0.83
LINC00540-201ENST00000611481 FAM160A2Q8N612 972 aaPredicted RBP9.86□□□□□ -0.83
LINC00540-201ENST00000611481 AAASQ9NRG9 546 aa9.86□□□□□ -0.83
LINC00540-201ENST00000611481 ST8SIA5O15466 376 aa9.85□□□□□ -0.83
LINC00540-201ENST00000611481 PLCB2Q00722 1185 aa9.85□□□□□ -0.83
LINC00540-201ENST00000611481 BRICD5Q6PL45 260 aa9.84□□□□□ -0.83
LINC00540-201ENST00000611481 PHOX2BQ99453 314 aa9.84□□□□□ -0.83
LINC00540-201ENST00000611481 GRIPAP1Q4V328 841 aa9.83□□□□□ -0.84
LINC00540-201ENST00000611481 GPIHBP1Q8IV16 184 aa9.82□□□□□ -0.84
LINC00540-201ENST00000611481 CYP4X1Q8N118 509 aa9.82□□□□□ -0.84
LINC00540-201ENST00000611481 CRIPAKQ8N1N5 446 aa9.82□□□□□ -0.84
LINC00540-201ENST00000611481 TOR4AQ9NXH8 423 aa9.82□□□□□ -0.84
LINC00540-201ENST00000611481 CUX2O14529 1486 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms