RNA–Protein interactions for RNA: ENST00000610401.4

SSBP3-216, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 3,168 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-216ENST00000610401 SYCP2Q9BX26 1530 aa26.47■■□□□ 1.83
SSBP3-216ENST00000610401 CROCC2H7BZ55 1655 aa26.47■■□□□ 1.83
SSBP3-216ENST00000610401 SLFN5Q08AF3 891 aa26.46■■□□□ 1.83
SSBP3-216ENST00000610401 USP35Q9P2H5 1018 aa26.46■■□□□ 1.83
SSBP3-216ENST00000610401 NUTM2DQ5VT03 806 aaPredicted RBP26.44■■□□□ 1.82
SSBP3-216ENST00000610401 BLMP54132 1417 aaPredicted RBP26.43■■□□□ 1.82
SSBP3-216ENST00000610401 WASHC2CQ9Y4E1 1318 aa26.4■■□□□ 1.82
SSBP3-216ENST00000610401 PRKCSHP14314 528 aaPredicted RBP26.39■■□□□ 1.82
SSBP3-216ENST00000610401 SHANK2Q9UPX8 1470 aa26.38■■□□□ 1.81
SSBP3-216ENST00000610401 SAFB2Q14151 953 aaKnown RBP eCLIP26.38■■□□□ 1.81
SSBP3-216ENST00000610401 TRPM1Q7Z4N2 1603 aa26.37■■□□□ 1.81
SSBP3-216ENST00000610401 KIF3BO15066 747 aa26.37■■□□□ 1.81
SSBP3-216ENST00000610401 RSPH4AQ5TD94 716 aa26.37■■□□□ 1.81
SSBP3-216ENST00000610401 SAMD9LQ8IVG5 1584 aa26.37■■□□□ 1.81
SSBP3-216ENST00000610401 TRAK1Q9UPV9 953 aa26.36■■□□□ 1.81
SSBP3-216ENST00000610401 CARD14Q9BXL6 1004 aa26.36■■□□□ 1.81
SSBP3-216ENST00000610401 GPRASP1Q5JY77 1395 aa26.35■■□□□ 1.81
SSBP3-216ENST00000610401 ZMYM4Q5VZL5 1548 aa26.34■■□□□ 1.81
SSBP3-216ENST00000610401 ABCA8O94911 1581 aa26.34■■□□□ 1.81
SSBP3-216ENST00000610401 E9PCH4 1651 aa26.33■■□□□ 1.81
SSBP3-216ENST00000610401 CENPJQ9HC77 1338 aaPredicted RBP26.32■■□□□ 1.8
SSBP3-216ENST00000610401 POGKQ9P215 609 aa26.32■■□□□ 1.8
SSBP3-216ENST00000610401 SPAG9O60271 1321 aaKnown RBP26.31■■□□□ 1.8
SSBP3-216ENST00000610401 ZNF521Q96K83 1311 aa26.31■■□□□ 1.8
SSBP3-216ENST00000610401 CDCA8Q53HL2 280 aa26.31■■□□□ 1.8
SSBP3-216ENST00000610401 TMEM132EQ6IEE7 984 aa26.31■■□□□ 1.8
SSBP3-216ENST00000610401 WDR7Q9Y4E6 1490 aa26.31■■□□□ 1.8
SSBP3-216ENST00000610401 SLC12A5Q9H2X9 1139 aa26.3■■□□□ 1.8
SSBP3-216ENST00000610401 NUP160Q12769 1436 aa26.3■■□□□ 1.8
SSBP3-216ENST00000610401 ADCY10Q96PN6 1610 aa26.3■■□□□ 1.8
SSBP3-216ENST00000610401 EFCAB2Q5VUJ9 269 aa26.3■■□□□ 1.8
SSBP3-216ENST00000610401 GZF1Q9H116 711 aaPredicted RBP26.3■■□□□ 1.8
SSBP3-216ENST00000610401 ADGRF5Q8IZF2 1346 aa26.29■■□□□ 1.8
SSBP3-216ENST00000610401 MORC1Q86VD1 984 aa26.28■■□□□ 1.8
SSBP3-216ENST00000610401 E9PSI1 815 aa26.27■■□□□ 1.8
SSBP3-216ENST00000610401 RLBP1P12271 317 aa26.27■■□□□ 1.8
SSBP3-216ENST00000610401 WWC1Q8IX03 1113 aa26.26■■□□□ 1.79
SSBP3-216ENST00000610401 PRDM15P57071 1507 aaPredicted RBP26.23■■□□□ 1.79
SSBP3-216ENST00000610401 TRAPPC8Q9Y2L5 1435 aa26.23■■□□□ 1.79
SSBP3-216ENST00000610401 PCDHB15Q9Y5E8 787 aa26.23■■□□□ 1.79
SSBP3-216ENST00000610401 TCP11L2Q8N4U5 519 aa26.22■■□□□ 1.79
SSBP3-216ENST00000610401 CDC42BPBQ9Y5S2 1711 aa26.21■■□□□ 1.79
SSBP3-216ENST00000610401 TTC37Q6PGP7 1564 aa26.21■■□□□ 1.79
SSBP3-216ENST00000610401 NKTRP30414 1462 aaKnown RBP26.19■■□□□ 1.78
SSBP3-216ENST00000610401 TSR2Q969E8 191 aaKnown RBP26.19■■□□□ 1.78
SSBP3-216ENST00000610401 U2AF1L5P0DN76 240 aaPredicted RBP26.17■■□□□ 1.78
SSBP3-216ENST00000610401 MTHFSP49914 203 aa26.17■■□□□ 1.78
SSBP3-216ENST00000610401 U2AF1Q01081 240 aaKnown RBP eCLIP26.17■■□□□ 1.78
SSBP3-216ENST00000610401 USP19O94966 1318 aa26.17■■□□□ 1.78
SSBP3-216ENST00000610401 U2SURPO15042 1029 aaKnown RBP26.16■■□□□ 1.78
SSBP3-216ENST00000610401 PDZRN3Q9UPQ7 1066 aa26.15■■□□□ 1.78
SSBP3-216ENST00000610401 GGT6Q6P531 493 aa26.15■■□□□ 1.78
SSBP3-216ENST00000610401 ARHGEF5Q12774 1597 aa26.15■■□□□ 1.78
SSBP3-216ENST00000610401 MFAP1P55081 439 aaKnown RBP26.14■■□□□ 1.78
SSBP3-216ENST00000610401 TRMT2AQ8IZ69 625 aaKnown RBP26.14■■□□□ 1.78
SSBP3-216ENST00000610401 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.14■■□□□ 1.772e-8■■■□□ 17.5
SSBP3-216ENST00000610401 ASXL1Q8IXJ9 1541 aa26.12■■□□□ 1.77
SSBP3-216ENST00000610401 RARSP54136 660 aaKnown RBP26.12■■□□□ 1.77
SSBP3-216ENST00000610401 CGNL1Q0VF96 1302 aa26.12■■□□□ 1.77
SSBP3-216ENST00000610401 FTSJ3Q8IY81 847 aaKnown RBP26.11■■□□□ 1.77
SSBP3-216ENST00000610401 UPF2Q9HAU5 1272 aaKnown RBP26.11■■□□□ 1.77
SSBP3-216ENST00000610401 STK26Q9P289 416 aa26.11■■□□□ 1.77
SSBP3-216ENST00000610401 SCAF11Q99590 1463 aaKnown RBP26.11■■□□□ 1.77
SSBP3-216ENST00000610401 BECN1Q14457 450 aa26.1■■□□□ 1.77
SSBP3-216ENST00000610401 MYO5CQ9NQX4 1742 aa26.1■■□□□ 1.77
SSBP3-216ENST00000610401 ERCC6L2Q5T890 1561 aa26.09■■□□□ 1.77
SSBP3-216ENST00000610401 UGGT1Q9NYU2 1555 aa26.09■■□□□ 1.77
SSBP3-216ENST00000610401 EIF3AQ14152 1382 aaKnown RBP26.05■■□□□ 1.76
SSBP3-216ENST00000610401 PDE3AQ14432 1141 aa26.05■■□□□ 1.76
SSBP3-216ENST00000610401 PREX2Q70Z35 1606 aa26.05■■□□□ 1.76
SSBP3-216ENST00000610401 SCAPERQ9BY12 1400 aa26.05■■□□□ 1.76
SSBP3-216ENST00000610401 NSD3Q9BZ95 1437 aa26.05■■□□□ 1.76
SSBP3-216ENST00000610401 ITPRIPQ8IWB1 547 aa26.04■■□□□ 1.76
SSBP3-216ENST00000610401 TBC1D2Q9BYX2 928 aa26.04■■□□□ 1.76
SSBP3-216ENST00000610401 CABP2Q9NPB3 220 aa26.04■■□□□ 1.76
SSBP3-216ENST00000610401 RUNDC1Q96C34 613 aa26.04■■□□□ 1.76
SSBP3-216ENST00000610401 FOXD4L1Q9NU39 408 aa26.04■■□□□ 1.76
SSBP3-216ENST00000610401 SMC4Q9NTJ3 1288 aa26.02■■□□□ 1.76
SSBP3-216ENST00000610401 FBLN1P23142 703 aa26.01■■□□□ 1.75
SSBP3-216ENST00000610401 PIK3C2GO75747 1445 aa26.01■■□□□ 1.75
SSBP3-216ENST00000610401 DUOX2Q9NRD8 1548 aa26.01■■□□□ 1.75
SSBP3-216ENST00000610401 MAPK8IP3Q9UPT6 1336 aa26.01■■□□□ 1.75
SSBP3-216ENST00000610401 GGNBP2Q9H3C7 697 aa26.01■■□□□ 1.75
SSBP3-216ENST00000610401 ATP10AO60312 1499 aa26■■□□□ 1.75
SSBP3-216ENST00000610401 EIF2AK4Q9P2K8 1649 aaKnown RBP25.99■■□□□ 1.75
SSBP3-216ENST00000610401 KANK1Q14678 1352 aa25.98■■□□□ 1.75
SSBP3-216ENST00000610401 PMFBP1Q8TBY8 1022 aa25.98■■□□□ 1.75
SSBP3-216ENST00000610401 MAST1Q9Y2H9 1570 aa25.98■■□□□ 1.75
SSBP3-216ENST00000610401 EXOSC9Q06265 439 aaKnown RBP25.97■■□□□ 1.75
SSBP3-216ENST00000610401 RWDD1Q9H446 243 aaPredicted RBP25.96■■□□□ 1.75
SSBP3-216ENST00000610401 UNC13BO14795 1591 aa25.96■■□□□ 1.75
SSBP3-216ENST00000610401 PANK2Q9BZ23 570 aa25.96■■□□□ 1.75
SSBP3-216ENST00000610401 INSRP06213 1382 aa25.95■■□□□ 1.75
SSBP3-216ENST00000610401 ELL2O00472 640 aaPredicted RBP25.95■■□□□ 1.74
SSBP3-216ENST00000610401 CFAP53Q96M91 514 aa25.95■■□□□ 1.74
SSBP3-216ENST00000610401 CFAP65Q6ZU64 1925 aaKnown RBP25.95■■□□□ 1.74
SSBP3-216ENST00000610401 PLCH2O75038 1416 aa25.95■■□□□ 1.74
SSBP3-216ENST00000610401 IQGAP3Q86VI3 1631 aa25.94■■□□□ 1.74
SSBP3-216ENST00000610401 ERVK-7P63135 1459 aa25.93■■□□□ 1.74
SSBP3-216ENST00000610401 SRPK2P78362 688 aaKnown RBP25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms