RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ZFYVE16Q7Z3T8 1539 aa23.94■■□□□ 1.42
UPF1-210ENST00000600689 PARD3Q8TEW0 1356 aa23.91■■□□□ 1.42
UPF1-210ENST00000600689 WDR43Q15061 677 aaKnown RBP eCLIP23.91■■□□□ 1.42
UPF1-210ENST00000600689 ASXL2Q76L83 1435 aa23.91■■□□□ 1.42
UPF1-210ENST00000600689 SCAPERQ9BY12 1400 aa23.9■■□□□ 1.42
UPF1-210ENST00000600689 FAM161AQ3B820 660 aa23.9■■□□□ 1.42
UPF1-210ENST00000600689 DISP3Q9P2K9 1392 aa23.89■■□□□ 1.42
UPF1-210ENST00000600689 C8orf34Q49A92 452 aa23.88■■□□□ 1.41
UPF1-210ENST00000600689 E9PCH4 1651 aa23.88■■□□□ 1.41
UPF1-210ENST00000600689 KIF3BO15066 747 aa23.87■■□□□ 1.41
UPF1-210ENST00000600689 ATP10AO60312 1499 aa23.87■■□□□ 1.41
UPF1-210ENST00000600689 RTEL1-TNFRSF6BF6WH68 1400 aa23.87■■□□□ 1.41
UPF1-210ENST00000600689 ARAP3Q8WWN8 1544 aa23.87■■□□□ 1.41
UPF1-210ENST00000600689 ADGRL1O94910 1474 aa23.87■■□□□ 1.41
UPF1-210ENST00000600689 ABCA9Q8IUA7 1624 aa23.87■■□□□ 1.41
UPF1-210ENST00000600689 SLKQ9H2G2 1235 aaPredicted RBP23.86■■□□□ 1.41
UPF1-210ENST00000600689 CENPQQ7L2Z9 268 aaPredicted RBP23.86■■□□□ 1.41
UPF1-210ENST00000600689 ATP7AQ04656 1500 aa23.85■■□□□ 1.41
UPF1-210ENST00000600689 GPRASP1Q5JY77 1395 aa23.84■■□□□ 1.41
UPF1-210ENST00000600689 OSCARQ8IYS5 282 aa23.84■■□□□ 1.41
UPF1-210ENST00000600689 KDM2BQ8NHM5 1336 aa23.83■■□□□ 1.41
UPF1-210ENST00000600689 TESK2Q96S53 571 aa23.83■■□□□ 1.41
UPF1-210ENST00000600689 BCAR3O75815 825 aa23.82■■□□□ 1.4
UPF1-210ENST00000600689 PLEKHH1Q9ULM0 1364 aa23.82■■□□□ 1.4
UPF1-210ENST00000600689 DUSP27Q5VZP5 1158 aa23.81■■□□□ 1.4
UPF1-210ENST00000600689 INO80Q9ULG1 1556 aaPredicted RBP23.8■■□□□ 1.4
UPF1-210ENST00000600689 KNSTRNQ9Y448 316 aa23.8■■□□□ 1.4
UPF1-210ENST00000600689 PRDM15P57071 1507 aaPredicted RBP23.8■■□□□ 1.4
UPF1-210ENST00000600689 TMF1P82094 1093 aa23.8■■□□□ 1.4
UPF1-210ENST00000600689 GOLGA2Q08379 1002 aa23.8■■□□□ 1.4
UPF1-210ENST00000600689 SPRYD3Q8NCJ5 442 aa23.78■■□□□ 1.4
UPF1-210ENST00000600689 SPINK5Q9NQ38 1064 aaPredicted RBP23.78■■□□□ 1.4
UPF1-210ENST00000600689 POGKQ9P215 609 aa23.77■■□□□ 1.4
UPF1-210ENST00000600689 NPM1P06748 294 aaKnown RBP eCLIP23.77■■□□□ 1.4
UPF1-210ENST00000600689 DEPDC5O75140 1603 aa23.76■■□□□ 1.39
UPF1-210ENST00000600689 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.76■■□□□ 1.39
UPF1-210ENST00000600689 CANXP27824 592 aaKnown RBP23.75■■□□□ 1.39
UPF1-210ENST00000600689 PPP2R1AP30153 589 aa23.75■■□□□ 1.39
UPF1-210ENST00000600689 CLTCL1P53675 1640 aa23.75■■□□□ 1.39
UPF1-210ENST00000600689 APAF1O14727 1248 aa23.75■■□□□ 1.39
UPF1-210ENST00000600689 SEC24BO95487 1268 aa23.75■■□□□ 1.39
UPF1-210ENST00000600689 TRPM2O94759 1503 aa23.75■■□□□ 1.39
UPF1-210ENST00000600689 SPHKAPQ2M3C7 1700 aa23.75■■□□□ 1.39
UPF1-210ENST00000600689 EIF2AK4Q9P2K8 1649 aaKnown RBP23.75■■□□□ 1.39
UPF1-210ENST00000600689 COL17A1Q9UMD9 1497 aaPredicted RBP23.74■■□□□ 1.39
UPF1-210ENST00000600689 NEUROD2Q15784 382 aa23.74■■□□□ 1.39
UPF1-210ENST00000600689 KANK1Q14678 1352 aa23.73■■□□□ 1.39
UPF1-210ENST00000600689 IGHDP01880 384 aa23.73■■□□□ 1.39
UPF1-210ENST00000600689 PTPRTO14522 1441 aa23.73■■□□□ 1.39
UPF1-210ENST00000600689 UGGT1Q9NYU2 1555 aa23.72■■□□□ 1.39
UPF1-210ENST00000600689 LAMC1P11047 1609 aa23.71■■□□□ 1.39
UPF1-210ENST00000600689 TET3O43151 1660 aa23.71■■□□□ 1.39
UPF1-210ENST00000600689 MADDQ8WXG6 1647 aa23.7■■□□□ 1.39
UPF1-210ENST00000600689 COG6Q9Y2V7 657 aa23.7■■□□□ 1.38
UPF1-210ENST00000600689 BLMP54132 1417 aaPredicted RBP23.7■■□□□ 1.38
UPF1-210ENST00000600689 CEP152O94986 1710 aa23.69■■□□□ 1.38
UPF1-210ENST00000600689 KIDINS220Q9ULH0 1771 aa23.69■■□□□ 1.38
UPF1-210ENST00000600689 PANK1Q8TE04 598 aa23.69■■□□□ 1.38
UPF1-210ENST00000600689 MROH1Q8NDA8 1641 aa23.69■■□□□ 1.38
UPF1-210ENST00000600689 DMRT2Q9Y5R5 561 aa23.68■■□□□ 1.38
UPF1-210ENST00000600689 RNF17Q9BXT8 1623 aaKnown RBP23.68■■□□□ 1.38
UPF1-210ENST00000600689 VWDEQ8N2E2 1590 aa23.68■■□□□ 1.38
UPF1-210ENST00000600689 CD109Q6YHK3 1445 aa23.67■■□□□ 1.38
UPF1-210ENST00000600689 GZF1Q9H116 711 aaPredicted RBP23.66■■□□□ 1.38
UPF1-210ENST00000600689 SLFN5Q08AF3 891 aa23.65■■□□□ 1.38
UPF1-210ENST00000600689 TNNT2P45379 298 aaPredicted RBP23.65■■□□□ 1.38
UPF1-210ENST00000600689 BCL2L13Q9BXK5 485 aa23.64■■□□□ 1.37
UPF1-210ENST00000600689 ZNF518AQ6AHZ1 1483 aa23.64■■□□□ 1.37
UPF1-210ENST00000600689 GGT6Q6P531 493 aa23.63■■□□□ 1.37
UPF1-210ENST00000600689 RRP7AQ9Y3A4 280 aaKnown RBP23.63■■□□□ 1.37
UPF1-210ENST00000600689 ZMYM4Q5VZL5 1548 aa23.63■■□□□ 1.37
UPF1-210ENST00000600689 CFAP70Q5T0N1 1121 aa23.61■■□□□ 1.37
UPF1-210ENST00000600689 CFAP65Q6ZU64 1925 aaKnown RBP23.6■■□□□ 1.37
UPF1-210ENST00000600689 ADGRF5Q8IZF2 1346 aa23.6■■□□□ 1.37
UPF1-210ENST00000600689 RAPGEF3O95398 923 aa23.6■■□□□ 1.37
UPF1-210ENST00000600689 CLUAP1Q96AJ1 413 aa23.6■■□□□ 1.37
UPF1-210ENST00000600689 IQGAP1P46940 1657 aa23.59■■□□□ 1.37
UPF1-210ENST00000600689 PPRC1Q5VV67 1664 aaKnown RBP23.58■■□□□ 1.37
UPF1-210ENST00000600689 CHGAP10645 457 aaKnown RBP23.58■■□□□ 1.37
UPF1-210ENST00000600689 TNNQ9UQP3 1299 aa23.58■■□□□ 1.37
UPF1-210ENST00000600689 AMER1Q5JTC6 1135 aaPredicted RBP23.57■■□□□ 1.36
UPF1-210ENST00000600689 USP19O94966 1318 aa23.57■■□□□ 1.36
UPF1-210ENST00000600689 EFCAB6Q5THR3 1501 aa23.57■■□□□ 1.36
UPF1-210ENST00000600689 POGZQ7Z3K3 1410 aa23.57■■□□□ 1.36
UPF1-210ENST00000600689 SCAF11Q99590 1463 aaKnown RBP23.56■■□□□ 1.36
UPF1-210ENST00000600689 BECN1Q14457 450 aa23.54■■□□□ 1.36
UPF1-210ENST00000600689 ZNF521Q96K83 1311 aa23.54■■□□□ 1.36
UPF1-210ENST00000600689 RRAGDQ9NQL2 400 aaPredicted RBP23.54■■□□□ 1.36
UPF1-210ENST00000600689 FRMPD1Q5SYB0 1578 aa23.53■■□□□ 1.36
UPF1-210ENST00000600689 FAM43AQ8N2R8 423 aa23.53■■□□□ 1.36
UPF1-210ENST00000600689 MROH2AA6NES4 1674 aa23.52■■□□□ 1.36
UPF1-210ENST00000600689 UBE2Q2Q8WVN8 375 aa23.5■■□□□ 1.35
UPF1-210ENST00000600689 STAC3Q96MF2 364 aa23.5■■□□□ 1.35
UPF1-210ENST00000600689 KIF1BO60333 1816 aa23.5■■□□□ 1.35
UPF1-210ENST00000600689 CENPJQ9HC77 1338 aaPredicted RBP23.5■■□□□ 1.35
UPF1-210ENST00000600689 NPATQ14207 1427 aa23.49■■□□□ 1.35
UPF1-210ENST00000600689 ABCA6Q8N139 1617 aa23.49■■□□□ 1.35
UPF1-210ENST00000600689 MAP3K4Q9Y6R4 1608 aa23.48■■□□□ 1.35
UPF1-210ENST00000600689 HECW2Q9P2P5 1572 aa23.47■■□□□ 1.35
UPF1-210ENST00000600689 MLH3Q9UHC1 1453 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms