RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 SRCAPQ6ZRS2 3230 aa24.7■■□□□ 1.54
LIG1-214ENST00000597146 SPATA31A6Q5VVP1 1343 aa24.7■■□□□ 1.54
LIG1-214ENST00000597146 ZNF772Q68DY9 489 aaPredicted RBP24.69■■□□□ 1.54
LIG1-214ENST00000597146 LMTK2Q8IWU2 1503 aa24.69■■□□□ 1.54
LIG1-214ENST00000597146 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.67■■□□□ 1.54
LIG1-214ENST00000597146 GCC2Q8IWJ2 1684 aa24.67■■□□□ 1.54
LIG1-214ENST00000597146 BCANQ96GW7 911 aa24.67■■□□□ 1.54
LIG1-214ENST00000597146 RRP7BPQ9NSQ0 103 aa24.67■■□□□ 1.54
LIG1-214ENST00000597146 KANK1Q14678 1352 aa24.67■■□□□ 1.54
LIG1-214ENST00000597146 NOS1P29475 1434 aa24.66■■□□□ 1.54
LIG1-214ENST00000597146 DIP2AQ14689 1571 aa24.64■■□□□ 1.54
LIG1-214ENST00000597146 ABCC5O15440 1437 aa24.64■■□□□ 1.54
LIG1-214ENST00000597146 CDK12Q9NYV4 1490 aaPredicted RBP24.63■■□□□ 1.53
LIG1-214ENST00000597146 ZFYVE9O95405 1425 aa24.62■■□□□ 1.53
LIG1-214ENST00000597146 RXRBP28702 533 aa24.61■■□□□ 1.53
LIG1-214ENST00000597146 PTPN23Q9H3S7 1636 aa24.61■■□□□ 1.53
LIG1-214ENST00000597146 PLEKHG1Q9ULL1 1385 aa24.6■■□□□ 1.53
LIG1-214ENST00000597146 KANK4Q5T7N3 995 aaPredicted RBP24.6■■□□□ 1.53
LIG1-214ENST00000597146 C14orf37Q86TY3 774 aa24.57■■□□□ 1.52
LIG1-214ENST00000597146 DAPK1P53355 1430 aa24.57■■□□□ 1.52
LIG1-214ENST00000597146 VPS8Q8N3P4 1428 aa24.56■■□□□ 1.52
LIG1-214ENST00000597146 TMEM131LA2VDJ0 1609 aa24.56■■□□□ 1.52
LIG1-214ENST00000597146 RGS12O14924 1447 aa24.55■■□□□ 1.52
LIG1-214ENST00000597146 RIMS2Q9UQ26 1411 aa24.55■■□□□ 1.52
LIG1-214ENST00000597146 NUTM2BA6NNL0 878 aaPredicted RBP24.55■■□□□ 1.52
LIG1-214ENST00000597146 NUTM2EB1AL46 878 aaPredicted RBP24.55■■□□□ 1.52
LIG1-214ENST00000597146 NUTM2AQ8IVF1 878 aaPredicted RBP24.55■■□□□ 1.52
LIG1-214ENST00000597146 NCOA3Q9Y6Q9 1424 aa24.54■■□□□ 1.52
LIG1-214ENST00000597146 AFF2P51816 1311 aa24.53■■□□□ 1.52
LIG1-214ENST00000597146 PPP1R15AO75807 674 aaPredicted RBP24.52■■□□□ 1.52
LIG1-214ENST00000597146 NHSL1Q5SYE7 1610 aa24.51■■□□□ 1.51
LIG1-214ENST00000597146 SLC52A1Q9NWF4 448 aa24.51■■□□□ 1.51
LIG1-214ENST00000597146 ADAMTS13Q76LX8 1427 aa24.5■■□□□ 1.51
LIG1-214ENST00000597146 CADPS2Q86UW7 1296 aa24.49■■□□□ 1.51
LIG1-214ENST00000597146 ASXL1Q8IXJ9 1541 aa24.49■■□□□ 1.51
LIG1-214ENST00000597146 ATF3P18847 181 aa24.48■■□□□ 1.51
LIG1-214ENST00000597146 BRINP3Q76B58 766 aa24.48■■□□□ 1.51
LIG1-214ENST00000597146 RPRD2Q5VT52 1461 aaKnown RBP24.47■■□□□ 1.51
LIG1-214ENST00000597146 CHIC2Q9UKJ5 165 aa24.47■■□□□ 1.51
LIG1-214ENST00000597146 ANKRD30AQ9BXX3 1397 aa24.46■■□□□ 1.51
LIG1-214ENST00000597146 C19orf44Q9H6X5 657 aa24.46■■□□□ 1.51
LIG1-214ENST00000597146 TBX22Q9Y458 520 aa24.46■■□□□ 1.51
LIG1-214ENST00000597146 NUTM2DQ5VT03 806 aaPredicted RBP24.44■■□□□ 1.5
LIG1-214ENST00000597146 SETD5Q9C0A6 1442 aa24.43■■□□□ 1.5
LIG1-214ENST00000597146 TRPM2O94759 1503 aa24.42■■□□□ 1.5
LIG1-214ENST00000597146 C8orf37Q96NL8 207 aa24.4■■□□□ 1.5
LIG1-214ENST00000597146 PTPRUQ92729 1446 aa24.4■■□□□ 1.5
LIG1-214ENST00000597146 UNC13BO14795 1591 aa24.4■■□□□ 1.5
LIG1-214ENST00000597146 XRN1Q8IZH2 1706 aaKnown RBP24.4■■□□□ 1.5
LIG1-214ENST00000597146 PIK3R4Q99570 1358 aa24.39■■□□□ 1.49
LIG1-214ENST00000597146 DCCP43146 1447 aa24.38■■□□□ 1.49
LIG1-214ENST00000597146 MST1RQ04912 1400 aa24.38■■□□□ 1.49
LIG1-214ENST00000597146 RBM6P78332 1123 aaKnown RBP24.38■■□□□ 1.49
LIG1-214ENST00000597146 E9PCH4 1651 aa24.37■■□□□ 1.49
LIG1-214ENST00000597146 CHGAP10645 457 aaKnown RBP24.37■■□□□ 1.49
LIG1-214ENST00000597146 HDGFP51858 240 aaKnown RBP24.37■■□□□ 1.49
LIG1-214ENST00000597146 QTRT2Q9H974 415 aaKnown RBP24.37■■□□□ 1.49
LIG1-214ENST00000597146 ADGRL2O95490 1459 aa24.36■■□□□ 1.49
LIG1-214ENST00000597146 SETBP1Q9Y6X0 1596 aa24.36■■□□□ 1.49
LIG1-214ENST00000597146 EP400Q96L91 3159 aa24.35■■□□□ 1.49
LIG1-214ENST00000597146 PNPLA6Q8IY17 1366 aa24.35■■□□□ 1.49
LIG1-214ENST00000597146 NRXN3Q9Y4C0 1643 aa24.35■■□□□ 1.49
LIG1-214ENST00000597146 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.34■■□□□ 1.49
LIG1-214ENST00000597146 AMOTL2Q9Y2J4 779 aa24.34■■□□□ 1.49
LIG1-214ENST00000597146 DDX17Q92841 729 aaKnown RBP24.33■■□□□ 1.49
LIG1-214ENST00000597146 NALCNQ8IZF0 1738 aa24.32■■□□□ 1.48
LIG1-214ENST00000597146 ATAD2Q6PL18 1390 aa24.32■■□□□ 1.48
LIG1-214ENST00000597146 ANKRD50Q9ULJ7 1429 aa24.3■■□□□ 1.48
LIG1-214ENST00000597146 LRRC59Q96AG4 307 aaKnown RBP24.29■■□□□ 1.48
LIG1-214ENST00000597146 ADAMTS2O95450 1211 aa24.26■■□□□ 1.47
LIG1-214ENST00000597146 NGLY1Q96IV0 654 aa24.24■■□□□ 1.47
LIG1-214ENST00000597146 ZRANB1Q9UGI0 708 aa24.24■■□□□ 1.47
LIG1-214ENST00000597146 ADGRL3Q9HAR2 1447 aa24.23■■□□□ 1.47
LIG1-214ENST00000597146 LAMC1P11047 1609 aa24.23■■□□□ 1.47
LIG1-214ENST00000597146 IQGAP3Q86VI3 1631 aa24.21■■□□□ 1.47
LIG1-214ENST00000597146 USP21Q9UK80 565 aa24.19■■□□□ 1.46
LIG1-214ENST00000597146 METP08581 1390 aa24.17■■□□□ 1.46
LIG1-214ENST00000597146 ATRNO75882 1429 aa24.17■■□□□ 1.46
LIG1-214ENST00000597146 LOC105371045A0A1W2PR82 267 aa24.16■■□□□ 1.46
LIG1-214ENST00000597146 COL22A1Q8NFW1 1626 aaPredicted RBP24.16■■□□□ 1.46
LIG1-214ENST00000597146 MARF1Q9Y4F3 1742 aaKnown RBP24.15■■□□□ 1.46
LIG1-214ENST00000597146 C1orf167Q5SNV9 1468 aa24.15■■□□□ 1.46
LIG1-214ENST00000597146 TRPC5Q9UL62 973 aaPredicted RBP24.15■■□□□ 1.46
LIG1-214ENST00000597146 FOXD1Q16676 465 aa24.14■■□□□ 1.45
LIG1-214ENST00000597146 SPHKAPQ2M3C7 1700 aa24.13■■□□□ 1.45
LIG1-214ENST00000597146 PTCH1Q13635 1447 aa24.12■■□□□ 1.45
LIG1-214ENST00000597146 FAM50AQ14320 339 aaKnown RBP24.12■■□□□ 1.45
LIG1-214ENST00000597146 APLP2Q06481 763 aa24.11■■□□□ 1.45
LIG1-214ENST00000597146 FNBP4Q8N3X1 1017 aaPredicted RBP24.09■■□□□ 1.45
LIG1-214ENST00000597146 SOS2Q07890 1332 aaPredicted RBP24.09■■□□□ 1.45
LIG1-214ENST00000597146 ORAI2Q96SN7 254 aa24.06■■□□□ 1.44
LIG1-214ENST00000597146 LRP5O75197 1615 aa24.06■■□□□ 1.44
LIG1-214ENST00000597146 BRWD3Q6RI45 1802 aa24.05■■□□□ 1.44
LIG1-214ENST00000597146 NEXMIFQ5QGS0 1516 aa24.05■■□□□ 1.44
LIG1-214ENST00000597146 MYOM2P54296 1465 aa24.05■■□□□ 1.44
LIG1-214ENST00000597146 BCL9LQ86UU0 1499 aa24.05■■□□□ 1.44
LIG1-214ENST00000597146 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.04■■□□□ 1.44
LIG1-214ENST00000597146 CCDC125Q86Z20 511 aa24.03■■□□□ 1.44
LIG1-214ENST00000597146 ZNF326Q5BKZ1 582 aaKnown RBP24.02■■□□□ 1.44
LIG1-214ENST00000597146 GLI3P10071 1580 aa24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms