RNA–Protein interactions for RNA: ENST00000595803.5

SHKBP1-209, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 773 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-209ENST00000595803 FAM135BQ49AJ0 1406 aa18.84■□□□□ 0.61
SHKBP1-209ENST00000595803 MROH1Q8NDA8 1641 aa18.84■□□□□ 0.61
SHKBP1-209ENST00000595803 UPF1Q92900 1129 aaKnown RBP eCLIP18.83■□□□□ 0.6
SHKBP1-209ENST00000595803 TONSLQ96HA7 1378 aa18.81■□□□□ 0.6
SHKBP1-209ENST00000595803 LMTK2Q8IWU2 1503 aa18.81■□□□□ 0.6
SHKBP1-209ENST00000595803 TET3O43151 1660 aa18.81■□□□□ 0.6
SHKBP1-209ENST00000595803 ROBO1Q9Y6N7 1651 aa18.81■□□□□ 0.6
SHKBP1-209ENST00000595803 CEP152O94986 1710 aa18.77■□□□□ 0.6
SHKBP1-209ENST00000595803 ABCC3O15438 1527 aa18.77■□□□□ 0.6
SHKBP1-209ENST00000595803 E9PCH4 1651 aa18.76■□□□□ 0.59
SHKBP1-209ENST00000595803 RPRD2Q5VT52 1461 aaKnown RBP18.76■□□□□ 0.59
SHKBP1-209ENST00000595803 CCDC144AA2RUR9 1427 aa18.75■□□□□ 0.59
SHKBP1-209ENST00000595803 SCAF11Q99590 1463 aaKnown RBP18.75■□□□□ 0.59
SHKBP1-209ENST00000595803 PPP1R15AO75807 674 aaPredicted RBP18.74■□□□□ 0.59
SHKBP1-209ENST00000595803 EFCAB6Q5THR3 1501 aa18.74■□□□□ 0.59
SHKBP1-209ENST00000595803 L3MBTL2Q969R5 705 aa18.72■□□□□ 0.59
SHKBP1-209ENST00000595803 UBR1Q8IWV7 1749 aa18.71■□□□□ 0.59
SHKBP1-209ENST00000595803 ARHGAP31Q2M1Z3 1444 aa18.71■□□□□ 0.59
SHKBP1-209ENST00000595803 PHLPP1O60346 1717 aa18.69■□□□□ 0.58
SHKBP1-209ENST00000595803 ERVK-7P63135 1459 aa18.69■□□□□ 0.58
SHKBP1-209ENST00000595803 TMEM94Q12767 1356 aa18.68■□□□□ 0.58
SHKBP1-209ENST00000595803 JCADQ9P266 1359 aa18.68■□□□□ 0.58
SHKBP1-209ENST00000595803 CFAP65Q6ZU64 1925 aaKnown RBP18.68■□□□□ 0.58
SHKBP1-209ENST00000595803 SPHKAPQ2M3C7 1700 aa18.68■□□□□ 0.58
SHKBP1-209ENST00000595803 LRP6O75581 1613 aa18.67■□□□□ 0.58
SHKBP1-209ENST00000595803 RGL3Q3MIN7 710 aa18.67■□□□□ 0.58
SHKBP1-209ENST00000595803 TRPM2O94759 1503 aa18.67■□□□□ 0.58
SHKBP1-209ENST00000595803 ARHGAP23Q9P227 1491 aa18.66■□□□□ 0.58
SHKBP1-209ENST00000595803 SLIT1O75093 1534 aa18.66■□□□□ 0.58
SHKBP1-209ENST00000595803 LTKP29376 864 aa18.65■□□□□ 0.58
SHKBP1-209ENST00000595803 CHGAP10645 457 aaKnown RBP18.64■□□□□ 0.57
SHKBP1-209ENST00000595803 NOS1P29475 1434 aa18.64■□□□□ 0.57
SHKBP1-209ENST00000595803 DCAF11Q8TEB1 546 aa18.63■□□□□ 0.57
SHKBP1-209ENST00000595803 SLC52A1Q9NWF4 448 aa18.63■□□□□ 0.57
SHKBP1-209ENST00000595803 KDM2AQ9Y2K7 1162 aa18.63■□□□□ 0.57
SHKBP1-209ENST00000595803 COL16A1Q07092 1604 aaPredicted RBP18.63■□□□□ 0.57
SHKBP1-209ENST00000595803 ZNF772Q68DY9 489 aaPredicted RBP18.62■□□□□ 0.57
SHKBP1-209ENST00000595803 TXNDC2Q86VQ3 553 aa18.61■□□□□ 0.57
SHKBP1-209ENST00000595803 CLTCL1P53675 1640 aa18.6■□□□□ 0.57
SHKBP1-209ENST00000595803 CDK12Q9NYV4 1490 aaPredicted RBP18.59■□□□□ 0.57
SHKBP1-209ENST00000595803 IDI1Q13907 227 aa18.59■□□□□ 0.57
SHKBP1-209ENST00000595803 MEX3CQ5U5Q3 659 aaKnown RBP18.59■□□□□ 0.57
SHKBP1-209ENST00000595803 ZNF326Q5BKZ1 582 aaKnown RBP18.58■□□□□ 0.56
SHKBP1-209ENST00000595803 RBM33Q96EV2 1170 aaKnown RBP18.58■□□□□ 0.56
SHKBP1-209ENST00000595803 SPATA31A6Q5VVP1 1343 aa18.57■□□□□ 0.56
SHKBP1-209ENST00000595803 STAC3Q96MF2 364 aa18.57■□□□□ 0.56
SHKBP1-209ENST00000595803 SPATA31E1Q6ZUB1 1445 aa18.57■□□□□ 0.56
SHKBP1-209ENST00000595803 RXRBP28702 533 aa18.56■□□□□ 0.56
SHKBP1-209ENST00000595803 STAG3Q9UJ98 1225 aa18.56■□□□□ 0.56
SHKBP1-209ENST00000595803 NKTRP30414 1462 aaKnown RBP18.56■□□□□ 0.56
SHKBP1-209ENST00000595803 KIF1BO60333 1816 aa18.56■□□□□ 0.56
SHKBP1-209ENST00000595803 NBPF8Q3BBV2 869 aa18.55■□□□□ 0.56
SHKBP1-209ENST00000595803 EID1Q9Y6B2 187 aa18.55■□□□□ 0.56
SHKBP1-209ENST00000595803 NWD1Q149M9 1564 aa18.55■□□□□ 0.56
SHKBP1-209ENST00000595803 MSH6P52701 1360 aa18.55■□□□□ 0.56
SHKBP1-209ENST00000595803 KCNA6P17658 529 aa18.54■□□□□ 0.56
SHKBP1-209ENST00000595803 PROSER2Q86WR7 435 aaPredicted RBP18.54■□□□□ 0.56
SHKBP1-209ENST00000595803 SLAIN2Q9P270 581 aa18.53■□□□□ 0.56
SHKBP1-209ENST00000595803 SHPRHQ149N8 1683 aa18.53■□□□□ 0.56
SHKBP1-209ENST00000595803 RPGRIP1LQ68CZ1 1315 aa18.52■□□□□ 0.56
SHKBP1-209ENST00000595803 PIK3C2BO00750 1634 aa18.51■□□□□ 0.55
SHKBP1-209ENST00000595803 TMEM2Q9UHN6 1383 aa18.51■□□□□ 0.55
SHKBP1-209ENST00000595803 RGS12O14924 1447 aa18.49■□□□□ 0.55
SHKBP1-209ENST00000595803 ZNF316A6NFI3 1004 aaPredicted RBP18.49■□□□□ 0.55
SHKBP1-209ENST00000595803 KDM5AP29375 1690 aaKnown RBP18.48■□□□□ 0.55
SHKBP1-209ENST00000595803 SLC26A8Q96RN1 970 aa18.47■□□□□ 0.55
SHKBP1-209ENST00000595803 AHDC1Q5TGY3 1603 aaPredicted RBP18.47■□□□□ 0.55
SHKBP1-209ENST00000595803 ADGRB3O60242 1522 aa18.46■□□□□ 0.55
SHKBP1-209ENST00000595803 VGFO15240 615 aaPredicted RBP18.45■□□□□ 0.54
SHKBP1-209ENST00000595803 PRAG1Q86YV5 1406 aa18.44■□□□□ 0.54
SHKBP1-209ENST00000595803 SETBP1Q9Y6X0 1596 aa18.43■□□□□ 0.54
SHKBP1-209ENST00000595803 HDGFP51858 240 aaKnown RBP18.43■□□□□ 0.54
SHKBP1-209ENST00000595803 AFF2P51816 1311 aa18.43■□□□□ 0.54
SHKBP1-209ENST00000595803 TMEM131LA2VDJ0 1609 aa18.42■□□□□ 0.54
SHKBP1-209ENST00000595803 EIF4G2P78344 907 aaKnown RBP eCLIP18.42■□□□□ 0.54
SHKBP1-209ENST00000595803 ADGRF5Q8IZF2 1346 aa18.42■□□□□ 0.54
SHKBP1-209ENST00000595803 DIP2AQ14689 1571 aa18.42■□□□□ 0.54
SHKBP1-209ENST00000595803 NUTM2DQ5VT03 806 aaPredicted RBP18.41■□□□□ 0.54
SHKBP1-209ENST00000595803 CARD11Q9BXL7 1154 aa18.41■□□□□ 0.54
SHKBP1-209ENST00000595803 MYOM2P54296 1465 aa18.39■□□□□ 0.54
SHKBP1-209ENST00000595803 NUTM2BA6NNL0 878 aaPredicted RBP18.39■□□□□ 0.53
SHKBP1-209ENST00000595803 NUTM2EB1AL46 878 aaPredicted RBP18.39■□□□□ 0.53
SHKBP1-209ENST00000595803 NUTM2AQ8IVF1 878 aaPredicted RBP18.39■□□□□ 0.53
SHKBP1-209ENST00000595803 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.39■□□□□ 0.53
SHKBP1-209ENST00000595803 ZRANB1Q9UGI0 708 aa18.39■□□□□ 0.53
SHKBP1-209ENST00000595803 ROCK2O75116 1388 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-209ENST00000595803 NBPF1Q3BBV0 1214 aa18.38■□□□□ 0.53
SHKBP1-209ENST00000595803 RALGAPBQ86X10 1494 aa18.38■□□□□ 0.53
SHKBP1-209ENST00000595803 HSPA5P11021 654 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-209ENST00000595803 MYO5BQ9ULV0 1848 aa18.37■□□□□ 0.53
SHKBP1-209ENST00000595803 PPLO60437 1756 aa18.36■□□□□ 0.53
SHKBP1-209ENST00000595803 CFAP70Q5T0N1 1121 aa18.36■□□□□ 0.53
SHKBP1-209ENST00000595803 HIRIP3Q9BW71 556 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-209ENST00000595803 IFT172Q9UG01 1749 aa18.36■□□□□ 0.53
SHKBP1-209ENST00000595803 NEXMIFQ5QGS0 1516 aa18.35■□□□□ 0.53
SHKBP1-209ENST00000595803 ZFYVE9O95405 1425 aa18.35■□□□□ 0.53
SHKBP1-209ENST00000595803 RIMS2Q9UQ26 1411 aa18.35■□□□□ 0.53
SHKBP1-209ENST00000595803 ATAD2Q6PL18 1390 aa18.35■□□□□ 0.53
SHKBP1-209ENST00000595803 C14orf93Q9H972 538 aaKnown RBP18.35■□□□□ 0.53
SHKBP1-209ENST00000595803 CHD2O14647 1828 aaKnown RBP18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms