RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	C11orf95	C9JLR9	678 aa	Predicted RBP	4.46	□□□□□ -1.69
VMP1-216	ENST00000592790	NPM1	P06748	294 aa	Known RBP eCLIP	4.46	□□□□□ -1.69
VMP1-216	ENST00000592790	JPH4	Q96JJ6	628 aa		4.46	□□□□□ -1.69
VMP1-216	ENST00000592790	ERBIN	Q96RT1	1412 aa		4.46	□□□□□ -1.69
VMP1-216	ENST00000592790	POLR1A	O95602	1720 aa	Predicted RBP	4.46	□□□□□ -1.7
VMP1-216	ENST00000592790	CCDC184	Q52MB2	194 aa		4.46	□□□□□ -1.7
VMP1-216	ENST00000592790	FRAT1	Q92837	279 aa	Predicted RBP	4.46	□□□□□ -1.7
VMP1-216	ENST00000592790	URB2	Q14146	1524 aa	Known RBP	4.46	□□□□□ -1.7
VMP1-216	ENST00000592790	LRPPRC	P42704	1394 aa	Known RBP	4.46	□□□□□ -1.7
VMP1-216	ENST00000592790	CT47B1	P0C2W7	299 aa	Predicted RBP	4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	SPATA31E1	Q6ZUB1	1445 aa		4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	MAGI1	Q96QZ7	1491 aa	Predicted RBP	4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	CHGA	P10645	457 aa	Known RBP	4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	MSN	P26038	577 aa	Known RBP	4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	IFNLR1	Q8IU57	520 aa	Predicted RBP	4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	CHMP5	Q9NZZ3	219 aa		4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	ADAMTS12	P58397	1594 aa		4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	DHX29	Q7Z478	1369 aa	Known RBP	4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	PARD3	Q8TEW0	1356 aa		4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	PTPRG	P23470	1445 aa		4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	HNRNPM	P52272	730 aa	Known RBP eCLIP	4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	CLUAP1	Q96AJ1	413 aa		4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	ZNF644	Q9H582	1327 aa	Predicted RBP	4.45	□□□□□ -1.7
VMP1-216	ENST00000592790	TNNT2	P45379	298 aa	Predicted RBP	4.44	□□□□□ -1.7
VMP1-216	ENST00000592790	KIAA0556	O60303	1618 aa		4.44	□□□□□ -1.7
VMP1-216	ENST00000592790	VASP	P50552	380 aa	Predicted RBP	4.44	□□□□□ -1.7
VMP1-216	ENST00000592790	PBRM1	Q86U86	1689 aa		4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	GPATCH8	Q9UKJ3	1502 aa	Known RBP	4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	PRG4	Q92954	1404 aa	Predicted RBP	4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	MRE11	P49959	708 aa		4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	ZKSCAN2	Q63HK3	967 aa		4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	RUNDC1	Q96C34	613 aa		4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	DDX19B	Q9UMR2	479 aa		4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	NKTR	P30414	1462 aa	Known RBP	4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	GRIN2A	Q12879	1464 aa		4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	SPAG9	O60271	1321 aa	Known RBP	4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	PLIN1	O60240	522 aa		4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	PPP2R1A	P30153	589 aa		4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	PZP	P20742	1482 aa		4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	ARHGAP5	Q13017	1502 aa		4.43	□□□□□ -1.7
VMP1-216	ENST00000592790	SYAP1	Q96A49	352 aa	Predicted RBP	4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	SLK	Q9H2G2	1235 aa	Predicted RBP	4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	ANO8	Q9HCE9	1232 aa	Predicted RBP	4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	ZMYM3	Q14202	1370 aa		4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	KDM5C	P41229	1560 aa		4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	SENP3-EIF4A1	A0A087X0R7	540 aa		4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	MCC	P23508	829 aa		4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	WDR63	Q8IWG1	891 aa		4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	ADAMTS8	Q9UP79	889 aa		4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	NUP153	P49790	1475 aa	Known RBP	4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	KIF16B	Q96L93	1317 aa		4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	ECM2	O94769	699 aa	Predicted RBP	4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	LMOD3	Q0VAK6	560 aa		4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	TMEM132A	Q24JP5	1023 aa		4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	CIZ1	Q9ULV3	898 aa	Predicted RBP	4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	MYCN	P04198	464 aa	Predicted RBP	4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	SLFN5	Q08AF3	891 aa		4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	NEUROD2	Q15784	382 aa		4.42	□□□□□ -1.7
VMP1-216	ENST00000592790	APAF1	O14727	1248 aa		4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	BLM	P54132	1417 aa	Predicted RBP	4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	PRAG1	Q86YV5	1406 aa		4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	NPC1L1	Q9UHC9	1359 aa		4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	SHROOM2	Q13796	1616 aa		4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	PIK3C2G	O75747	1445 aa		4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	PTMA	P06454	111 aa	Known RBP	4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	HSP90AA2P	Q14568	343 aa	Predicted RBP	4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	MTERF4	Q7Z6M4	381 aa	Known RBP	4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	MAP7D2	Q96T17	732 aa		4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	SMC4	Q9NTJ3	1288 aa		4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	TERF2IP	Q9NYB0	399 aa		4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	COL17A1	Q9UMD9	1497 aa	Predicted RBP	4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	PHF14	O94880	888 aa		4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	ITPRIP	Q8IWB1	547 aa		4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	CDCA7L	Q96GN5	454 aa		4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	ARHGEF5	Q12774	1597 aa		4.41	□□□□□ -1.7
VMP1-216	ENST00000592790	TPM2	P07951	284 aa		4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	U2AF1L5	P0DN76	240 aa	Predicted RBP	4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	U2AF1	Q01081	240 aa	Known RBP eCLIP	4.4	□□□□□ -1.7	1e-15	■■■□□ 18.2
VMP1-216	ENST00000592790	DZIP1L	Q8IYY4	767 aa	Known RBP	4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	ZNF428	Q96B54	188 aa		4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	CHMP4A	Q9BY43	222 aa		4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	STAG3	Q9UJ98	1225 aa		4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	GPRASP1	Q5JY77	1395 aa		4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	SCAF11	Q99590	1463 aa	Known RBP	4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	MBD5	Q9P267	1494 aa		4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	EVC2	Q86UK5	1308 aa		4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	ASXL1	Q8IXJ9	1541 aa		4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	KDM5D	Q9BY66	1539 aa		4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	MFAP1	P55081	439 aa	Known RBP	4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	CSPP1	Q1MSJ5	1256 aa		4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	CCDC146	Q8IYE0	955 aa		4.4	□□□□□ -1.7
VMP1-216	ENST00000592790	DUOX2	Q9NRD8	1548 aa		4.4	□□□□□ -1.71
VMP1-216	ENST00000592790	FAM135A	Q9P2D6	1515 aa		4.4	□□□□□ -1.71
VMP1-216	ENST00000592790	U2SURP	O15042	1029 aa	Known RBP	4.4	□□□□□ -1.71
VMP1-216	ENST00000592790	PDIA4	P13667	645 aa	Known RBP	4.4	□□□□□ -1.71
VMP1-216	ENST00000592790	CHAF1A	Q13111	956 aa	Predicted RBP	4.4	□□□□□ -1.71
VMP1-216	ENST00000592790	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	4.4	□□□□□ -1.71
VMP1-216	ENST00000592790	C22orf23	Q9BZE7	217 aa		4.4	□□□□□ -1.71
VMP1-216	ENST00000592790	DNAJC5	Q9H3Z4	198 aa		4.4	□□□□□ -1.71

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