RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 KIF27Q86VH2 1401 aa13.92□□□□□ -0.18
SMAD4-209ENST00000589941 HOXB1P14653 301 aaPredicted RBP13.92□□□□□ -0.18
SMAD4-209ENST00000589941 P3H3Q8IVL6 736 aa13.92□□□□□ -0.18
SMAD4-209ENST00000589941 ARIH1Q9Y4X5 557 aaPredicted RBP13.92□□□□□ -0.18
SMAD4-209ENST00000589941 TBC1D12O60347 775 aa13.91□□□□□ -0.18
SMAD4-209ENST00000589941 NUDT7P0C024 238 aa13.91□□□□□ -0.18
SMAD4-209ENST00000589941 ARHGEF1Q92888 912 aaKnown RBP13.91□□□□□ -0.18
SMAD4-209ENST00000589941 CARMIL1Q5VZK9 1371 aa13.89□□□□□ -0.19
SMAD4-209ENST00000589941 KCNH8Q96L42 1107 aa13.89□□□□□ -0.19
SMAD4-209ENST00000589941 EVI5O60447 810 aa13.87□□□□□ -0.19
SMAD4-209ENST00000589941 RAPGEF3O95398 923 aa13.87□□□□□ -0.19
SMAD4-209ENST00000589941 MARVELD3Q96A59 401 aa13.87□□□□□ -0.19
SMAD4-209ENST00000589941 LTBP4Q8N2S1 1624 aa13.85□□□□□ -0.19
SMAD4-209ENST00000589941 ARID4BQ4LE39 1312 aaPredicted RBP13.85□□□□□ -0.19
SMAD4-209ENST00000589941 PDIA6Q15084 440 aa13.84□□□□□ -0.19
SMAD4-209ENST00000589941 NEO1Q92859 1461 aa13.82□□□□□ -0.2
SMAD4-209ENST00000589941 ANO8Q9HCE9 1232 aaPredicted RBP13.82□□□□□ -0.2
SMAD4-209ENST00000589941 MED1Q15648 1581 aaPredicted RBP13.8□□□□□ -0.2
SMAD4-209ENST00000589941 LHX6Q9UPM6 363 aa13.8□□□□□ -0.2
SMAD4-209ENST00000589941 FANCAO15360 1455 aa13.8□□□□□ -0.2
SMAD4-209ENST00000589941 ZMYM4Q5VZL5 1548 aa13.8□□□□□ -0.2
SMAD4-209ENST00000589941 SPDYE16A6NNV3 312 aaPredicted RBP13.79□□□□□ -0.2
SMAD4-209ENST00000589941 EMP3P54852 163 aa13.78□□□□□ -0.2
SMAD4-209ENST00000589941 ZNF316A6NFI3 1004 aaPredicted RBP13.77□□□□□ -0.21
SMAD4-209ENST00000589941 ZFYVE16Q7Z3T8 1539 aa13.77□□□□□ -0.21
SMAD4-209ENST00000589941 YEATS2Q9ULM3 1422 aa13.77□□□□□ -0.21
SMAD4-209ENST00000589941 ARHGEF12Q9NZN5 1544 aa13.76□□□□□ -0.21
SMAD4-209ENST00000589941 SEMA3EO15041 775 aa13.76□□□□□ -0.21
SMAD4-209ENST00000589941 POTEB3A0JP26 581 aa13.75□□□□□ -0.21
SMAD4-209ENST00000589941 ARID3CA6NKF2 412 aa13.75□□□□□ -0.21
SMAD4-209ENST00000589941 POTEBQ6S5H4 581 aa13.75□□□□□ -0.21
SMAD4-209ENST00000589941 FAM205CA6NFA0 338 aa13.74□□□□□ -0.21
SMAD4-209ENST00000589941 ATP10BO94823 1461 aa13.74□□□□□ -0.21
SMAD4-209ENST00000589941 IQSEC2Q5JU85 1478 aa13.74□□□□□ -0.21
SMAD4-209ENST00000589941 RAPGEF2Q9Y4G8 1499 aa13.74□□□□□ -0.21
SMAD4-209ENST00000589941 PHLDB1Q86UU1 1377 aa13.73□□□□□ -0.21
SMAD4-209ENST00000589941 ERBB3P21860 1342 aa13.73□□□□□ -0.21
SMAD4-209ENST00000589941 MLLT3P42568 568 aaPredicted RBP13.73□□□□□ -0.21
SMAD4-209ENST00000589941 EFCAB5A4FU69 1503 aa13.73□□□□□ -0.21
SMAD4-209ENST00000589941 HECW1Q76N89 1606 aa13.72□□□□□ -0.21
SMAD4-209ENST00000589941 PTGER2P43116 358 aa13.72□□□□□ -0.21
SMAD4-209ENST00000589941 DDX12PQ92771 950 aa13.72□□□□□ -0.21
SMAD4-209ENST00000589941 C3P01024 1663 aa13.72□□□□□ -0.21
SMAD4-209ENST00000589941 CFAP74Q9C0B2 1584 aa13.71□□□□□ -0.21
SMAD4-209ENST00000589941 VARS2Q5ST30 1063 aaKnown RBP13.71□□□□□ -0.21
SMAD4-209ENST00000589941 AKNAQ7Z591 1439 aa13.71□□□□□ -0.22
SMAD4-209ENST00000589941 DENND4BO75064 1496 aaPredicted RBP13.7□□□□□ -0.22
SMAD4-209ENST00000589941 SUPT5HO00267 1087 aaKnown RBP13.7□□□□□ -0.22
SMAD4-209ENST00000589941 POGZQ7Z3K3 1410 aa13.7□□□□□ -0.22
SMAD4-209ENST00000589941 FOSBP53539 338 aa13.69□□□□□ -0.22
SMAD4-209ENST00000589941 MLECQ14165 292 aa13.69□□□□□ -0.22
SMAD4-209ENST00000589941 HS3ST6Q96QI5 342 aa13.69□□□□□ -0.22
SMAD4-209ENST00000589941 PTPRTO14522 1441 aa13.69□□□□□ -0.22
SMAD4-209ENST00000589941 FHOD3Q2V2M9 1422 aa13.69□□□□□ -0.22
SMAD4-209ENST00000589941 GOLGA3Q08378 1498 aa13.68□□□□□ -0.22
SMAD4-209ENST00000589941 GRXCR2A6NFK2 248 aa13.68□□□□□ -0.22
SMAD4-209ENST00000589941 ZNF454Q8N9F8 522 aa13.68□□□□□ -0.22
SMAD4-209ENST00000589941 PCDHGA10Q9Y5H3 936 aa13.68□□□□□ -0.22
SMAD4-209ENST00000589941 RAPGEF6Q8TEU7 1601 aa13.68□□□□□ -0.22
SMAD4-209ENST00000589941 TESPA1A2RU30 521 aaPredicted RBP13.66□□□□□ -0.22
SMAD4-209ENST00000589941 POTEMA6NI47 508 aa13.66□□□□□ -0.22
SMAD4-209ENST00000589941 POTEGQ6S5H5 508 aa13.66□□□□□ -0.22
SMAD4-209ENST00000589941 UHRF1BP1Q6BDS2 1440 aa13.65□□□□□ -0.22
SMAD4-209ENST00000589941 PHF14O94880 888 aa13.65□□□□□ -0.22
SMAD4-209ENST00000589941 PRIM1P49642 420 aaKnown RBP13.65□□□□□ -0.22
SMAD4-209ENST00000589941 CEBPAP49715 358 aaPredicted RBP13.65□□□□□ -0.22
SMAD4-209ENST00000589941 SETD1BQ9UPS6 1966 aaKnown RBP13.65□□□□□ -0.22
SMAD4-209ENST00000589941 NBR1Q14596 966 aa13.64□□□□□ -0.23
SMAD4-209ENST00000589941 PSDA5PKW4 1024 aaPredicted RBP13.62□□□□□ -0.23
SMAD4-209ENST00000589941 OSBPP22059 807 aa13.62□□□□□ -0.23
SMAD4-209ENST00000589941 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.62□□□□□ -0.23
SMAD4-209ENST00000589941 PPP4R3BQ5MIZ7 849 aa13.61□□□□□ -0.23
SMAD4-209ENST00000589941 NCOA1Q15788 1441 aa13.6□□□□□ -0.23
SMAD4-209ENST00000589941 SAMD9Q5K651 1589 aa13.6□□□□□ -0.23
SMAD4-209ENST00000589941 TYW1BQ6NUM6 668 aa13.6□□□□□ -0.23
SMAD4-209ENST00000589941 ZDHHC16Q969W1 377 aa13.6□□□□□ -0.23
SMAD4-209ENST00000589941 ADAM33Q9BZ11 813 aa13.6□□□□□ -0.23
SMAD4-209ENST00000589941 POTEEQ6S8J3 1075 aa13.59□□□□□ -0.23
SMAD4-209ENST00000589941 EPAS1Q99814 870 aa13.59□□□□□ -0.23
SMAD4-209ENST00000589941 MAGI2Q86UL8 1455 aa13.59□□□□□ -0.23
SMAD4-209ENST00000589941 SUPT6HQ7KZ85 1726 aaKnown RBP13.59□□□□□ -0.23
SMAD4-209ENST00000589941 ZNF687Q8N1G0 1237 aa13.58□□□□□ -0.24
SMAD4-209ENST00000589941 NUP153P49790 1475 aaKnown RBP13.58□□□□□ -0.24
SMAD4-209ENST00000589941 CAMSAP1Q5T5Y3 1602 aa13.57□□□□□ -0.24
SMAD4-209ENST00000589941 C9orf84Q5VXU9 1444 aa13.57□□□□□ -0.24
SMAD4-209ENST00000589941 RBM33Q96EV2 1170 aaKnown RBP13.57□□□□□ -0.24
SMAD4-209ENST00000589941 ABCA6Q8N139 1617 aa13.56□□□□□ -0.24
SMAD4-209ENST00000589941 DIP2CQ9Y2E4 1556 aa13.55□□□□□ -0.24
SMAD4-209ENST00000589941 UBAP1LF5GYI3 381 aa13.55□□□□□ -0.24
SMAD4-209ENST00000589941 FBXW7Q969H0 707 aa13.55□□□□□ -0.24
SMAD4-209ENST00000589941 BCANQ96GW7 911 aa13.55□□□□□ -0.24
SMAD4-209ENST00000589941 ATP10AO60312 1499 aa13.55□□□□□ -0.24
SMAD4-209ENST00000589941 EN1Q05925 392 aaPredicted RBP13.54□□□□□ -0.24
SMAD4-209ENST00000589941 BCL2L12Q9HB09 334 aa13.54□□□□□ -0.24
SMAD4-209ENST00000589941 ZNF335Q9H4Z2 1342 aaPredicted RBP13.54□□□□□ -0.24
SMAD4-209ENST00000589941 ZNF142P52746 1687 aaPredicted RBP13.53□□□□□ -0.24
SMAD4-209ENST00000589941 TSR1Q2NL82 804 aaKnown RBP13.53□□□□□ -0.24
SMAD4-209ENST00000589941 RBM26Q5T8P6 1007 aaKnown RBP13.53□□□□□ -0.24
SMAD4-209ENST00000589941 AXIN2Q9Y2T1 843 aa13.53□□□□□ -0.24
SMAD4-209ENST00000589941 MYO3AQ8NEV4 1616 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms