RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	KIF7	Q2M1P5	1343 aa		21.46	■■□□□ 1.03
DDX39A-209	ENST00000589318	ERVK-7	P63135	1459 aa		21.46	■■□□□ 1.03
DDX39A-209	ENST00000589318	YTHDC1	Q96MU7	727 aa	Known RBP	21.45	■■□□□ 1.02
DDX39A-209	ENST00000589318	IQGAP1	P46940	1657 aa		21.44	■■□□□ 1.02
DDX39A-209	ENST00000589318	ST20-MTHFS	A0A0A6YYL1	179 aa		21.43	■■□□□ 1.02
DDX39A-209	ENST00000589318	MYO5B	Q9ULV0	1848 aa		21.43	■■□□□ 1.02
DDX39A-209	ENST00000589318	MLEC	Q14165	292 aa		21.43	■■□□□ 1.02
DDX39A-209	ENST00000589318	ADGRF5	Q8IZF2	1346 aa		21.42	■■□□□ 1.02
DDX39A-209	ENST00000589318	SPATA31D1	Q6ZQQ2	1576 aa		21.42	■■□□□ 1.02
DDX39A-209	ENST00000589318	FBXO31	Q5XUX0	539 aa	Predicted RBP	21.42	■■□□□ 1.02
DDX39A-209	ENST00000589318	IDI1	Q13907	227 aa		21.41	■■□□□ 1.02
DDX39A-209	ENST00000589318	SLC52A1	Q9NWF4	448 aa		21.41	■■□□□ 1.02
DDX39A-209	ENST00000589318	TMEM131L	A2VDJ0	1609 aa		21.41	■■□□□ 1.02
DDX39A-209	ENST00000589318	CHGA	P10645	457 aa	Known RBP	21.41	■■□□□ 1.02
DDX39A-209	ENST00000589318	BCL11A	Q9H165	835 aa		21.41	■■□□□ 1.02
DDX39A-209	ENST00000589318	NEXMIF	Q5QGS0	1516 aa		21.4	■■□□□ 1.02
DDX39A-209	ENST00000589318	RPGRIP1L	Q68CZ1	1315 aa		21.38	■■□□□ 1.01
DDX39A-209	ENST00000589318	ARID4B	Q4LE39	1312 aa	Predicted RBP	21.38	■■□□□ 1.01
DDX39A-209	ENST00000589318	PIK3C2G	O75747	1445 aa		21.36	■■□□□ 1.01
DDX39A-209	ENST00000589318	SCAF11	Q99590	1463 aa	Known RBP	21.34	■■□□□ 1.01
DDX39A-209	ENST00000589318	ZMYM3	Q14202	1370 aa		21.34	■■□□□ 1.01
DDX39A-209	ENST00000589318	CFAP70	Q5T0N1	1121 aa		21.33	■■□□□ 1.01
DDX39A-209	ENST00000589318	TESK2	Q96S53	571 aa		21.33	■■□□□ 1.01
DDX39A-209	ENST00000589318	SETBP1	Q9Y6X0	1596 aa		21.32	■■□□□ 1
DDX39A-209	ENST00000589318	ANP32C	O43423	234 aa		21.3	■■□□□ 1
DDX39A-209	ENST00000589318	ZFYVE9	O95405	1425 aa		21.3	■■□□□ 1
DDX39A-209	ENST00000589318	SUPT16H	Q9Y5B9	1047 aa	Known RBP	21.29	■■□□□ 1
DDX39A-209	ENST00000589318	ADGRB1	O14514	1584 aa		21.29	■■□□□ 1
DDX39A-209	ENST00000589318	ESF1	Q9H501	851 aa	Known RBP	21.27	■■□□□ 1
DDX39A-209	ENST00000589318	C14orf93	Q9H972	538 aa	Known RBP	21.27	■■□□□ 1
DDX39A-209	ENST00000589318	DISP3	Q9P2K9	1392 aa		21.27	■■□□□ 1
DDX39A-209	ENST00000589318	A2ML1	A8K2U0	1454 aa		21.26	■□□□□ 0.99
DDX39A-209	ENST00000589318	VGF	O15240	615 aa	Predicted RBP	21.25	■□□□□ 0.99
DDX39A-209	ENST00000589318	MYO3A	Q8NEV4	1616 aa		21.25	■□□□□ 0.99
DDX39A-209	ENST00000589318	FER1L4	A9Z1Z3	1794 aa		21.24	■□□□□ 0.99
DDX39A-209	ENST00000589318	NUTM2D	Q5VT03	806 aa	Predicted RBP	21.24	■□□□□ 0.99
DDX39A-209	ENST00000589318	POLR3GL	Q9BT43	218 aa		21.23	■□□□□ 0.99
DDX39A-209	ENST00000589318	CCER2	I3L3R5	266 aa		21.22	■□□□□ 0.99
DDX39A-209	ENST00000589318	TSHZ2	Q9NRE2	1034 aa		21.22	■□□□□ 0.99
DDX39A-209	ENST00000589318	C3	P01024	1663 aa		21.22	■□□□□ 0.99
DDX39A-209	ENST00000589318	EIF3A	Q14152	1382 aa	Known RBP	21.22	■□□□□ 0.99
DDX39A-209	ENST00000589318	KDM5A	P29375	1690 aa	Known RBP	21.21	■□□□□ 0.99
DDX39A-209	ENST00000589318	TNR	Q92752	1358 aa		21.2	■□□□□ 0.98
DDX39A-209	ENST00000589318	ASXL1	Q8IXJ9	1541 aa		21.19	■□□□□ 0.98
DDX39A-209	ENST00000589318	TMF1	P82094	1093 aa		21.19	■□□□□ 0.98
DDX39A-209	ENST00000589318	UBR1	Q8IWV7	1749 aa		21.17	■□□□□ 0.98
DDX39A-209	ENST00000589318	PRKRIP1	Q9H875	184 aa	Predicted RBP	21.17	■□□□□ 0.98
DDX39A-209	ENST00000589318	STAG3	Q9UJ98	1225 aa		21.17	■□□□□ 0.98
DDX39A-209	ENST00000589318	TMEM132E	Q6IEE7	984 aa		21.16	■□□□□ 0.98
DDX39A-209	ENST00000589318	ARHGEF28	Q8N1W1	1705 aa	Known RBP	21.16	■□□□□ 0.98
DDX39A-209	ENST00000589318	RIMS2	Q9UQ26	1411 aa		21.16	■□□□□ 0.98
DDX39A-209	ENST00000589318	SBNO2	Q9Y2G9	1366 aa		21.15	■□□□□ 0.98
DDX39A-209	ENST00000589318	ALK	Q9UM73	1620 aa		21.14	■□□□□ 0.97
DDX39A-209	ENST00000589318	QRICH2	Q9H0J4	1663 aa		21.13	■□□□□ 0.97
DDX39A-209	ENST00000589318	SETD1A	O15047	1707 aa	Known RBP	21.13	■□□□□ 0.97
DDX39A-209	ENST00000589318	CEBPA	P49715	358 aa	Predicted RBP	21.13	■□□□□ 0.97
DDX39A-209	ENST00000589318	MYOM1	P52179	1685 aa		21.12	■□□□□ 0.97
DDX39A-209	ENST00000589318	TRAK1	Q9UPV9	953 aa		21.12	■□□□□ 0.97
DDX39A-209	ENST00000589318	NLRP1	Q9C000	1473 aa		21.11	■□□□□ 0.97
DDX39A-209	ENST00000589318	NRXN3	Q9Y4C0	1643 aa		21.1	■□□□□ 0.97
DDX39A-209	ENST00000589318	CENPJ	Q9HC77	1338 aa	Predicted RBP	21.1	■□□□□ 0.97
DDX39A-209	ENST00000589318	PTPRM	P28827	1452 aa		21.09	■□□□□ 0.97
DDX39A-209	ENST00000589318	PER1	O15534	1290 aa	Predicted RBP	21.08	■□□□□ 0.96
DDX39A-209	ENST00000589318	ADAMTSL3	P82987	1691 aa		21.06	■□□□□ 0.96
DDX39A-209	ENST00000589318	RIMS1	Q86UR5	1692 aa	Known RBP	21.06	■□□□□ 0.96
DDX39A-209	ENST00000589318	SLC24A1	O60721	1099 aa		21.06	■□□□□ 0.96
DDX39A-209	ENST00000589318	CDCA8	Q53HL2	280 aa		21.06	■□□□□ 0.96
DDX39A-209	ENST00000589318	SENP3	Q9H4L4	574 aa	Predicted RBP	21.06	■□□□□ 0.96
DDX39A-209	ENST00000589318	TMEM2	Q9UHN6	1383 aa		21.05	■□□□□ 0.96
DDX39A-209	ENST00000589318	YTHDC2	Q9H6S0	1430 aa	Known RBP	21.04	■□□□□ 0.96
DDX39A-209	ENST00000589318	CCDC184	Q52MB2	194 aa		21.04	■□□□□ 0.96
DDX39A-209	ENST00000589318	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	21.04	■□□□□ 0.96
DDX39A-209	ENST00000589318	PANK3	Q9H999	370 aa		21.02	■□□□□ 0.96
DDX39A-209	ENST00000589318	TULP4	Q9NRJ4	1543 aa		21	■□□□□ 0.95
DDX39A-209	ENST00000589318	SLIT1	O75093	1534 aa		20.99	■□□□□ 0.95
DDX39A-209	ENST00000589318	ARHGAP23	Q9P227	1491 aa		20.98	■□□□□ 0.95
DDX39A-209	ENST00000589318	KTN1	Q86UP2	1357 aa	Known RBP	20.98	■□□□□ 0.95
DDX39A-209	ENST00000589318	DLC1	Q96QB1	1528 aa		20.98	■□□□□ 0.95
DDX39A-209	ENST00000589318	STK26	Q9P289	416 aa		20.98	■□□□□ 0.95
DDX39A-209	ENST00000589318	HDGF	P51858	240 aa	Known RBP	20.96	■□□□□ 0.95
DDX39A-209	ENST00000589318	CNGB1	Q14028	1251 aa	Predicted RBP	20.96	■□□□□ 0.95
DDX39A-209	ENST00000589318	PLPPR3	Q6T4P5	718 aa		20.96	■□□□□ 0.95
DDX39A-209	ENST00000589318	PARD3	Q8TEW0	1356 aa		20.96	■□□□□ 0.95
DDX39A-209	ENST00000589318	LRPPRC	P42704	1394 aa	Known RBP	20.96	■□□□□ 0.95
DDX39A-209	ENST00000589318	LTK	P29376	864 aa		20.95	■□□□□ 0.94
DDX39A-209	ENST00000589318	MET	P08581	1390 aa		20.95	■□□□□ 0.94
DDX39A-209	ENST00000589318	ADAMTS13	Q76LX8	1427 aa		20.94	■□□□□ 0.94
DDX39A-209	ENST00000589318	RALBP1	Q15311	655 aa		20.94	■□□□□ 0.94
DDX39A-209	ENST00000589318	KNDC1	Q76NI1	1749 aa		20.93	■□□□□ 0.94
DDX39A-209	ENST00000589318	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	20.93	■□□□□ 0.94
DDX39A-209	ENST00000589318	PLEKHG1	Q9ULL1	1385 aa		20.93	■□□□□ 0.94
DDX39A-209	ENST00000589318	MRS2	Q9HD23	443 aa		20.93	■□□□□ 0.94
DDX39A-209	ENST00000589318	ABCC11	Q96J66	1382 aa		20.92	■□□□□ 0.94
DDX39A-209	ENST00000589318	PRAM1	Q96QH2	718 aa		20.92	■□□□□ 0.94
DDX39A-209	ENST00000589318	PUS7	Q96PZ0	661 aa	Known RBP	20.91	■□□□□ 0.94
DDX39A-209	ENST00000589318	MED14	O60244	1454 aa		20.91	■□□□□ 0.94
DDX39A-209	ENST00000589318	ZNF142	P52746	1687 aa	Predicted RBP	20.91	■□□□□ 0.94
DDX39A-209	ENST00000589318	SAFB2	Q14151	953 aa	Known RBP eCLIP	20.9	■□□□□ 0.94
DDX39A-209	ENST00000589318	EVC2	Q86UK5	1308 aa		20.9	■□□□□ 0.94
DDX39A-209	ENST00000589318	MYBBP1A	Q9BQG0	1328 aa	Known RBP	20.9	■□□□□ 0.94

Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms