RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 ERVK-7P63135 1459 aa27.64■■■□□ 2.02
TRIM47-204ENST00000587339 RPGRIP1LQ68CZ1 1315 aa27.64■■■□□ 2.02
TRIM47-204ENST00000587339 ADGRF5Q8IZF2 1346 aa27.64■■■□□ 2.02
TRIM47-204ENST00000587339 ANP32CO43423 234 aa27.61■■■□□ 2.01
TRIM47-204ENST00000587339 NRXN1Q9ULB1 1477 aa27.61■■■□□ 2.01
TRIM47-204ENST00000587339 KIAA1210Q9ULL0 1709 aa27.6■■■□□ 2.01
TRIM47-204ENST00000587339 PPLO60437 1756 aa27.59■■■□□ 2.01
TRIM47-204ENST00000587339 CFAP70Q5T0N1 1121 aa27.56■■■□□ 2
TRIM47-204ENST00000587339 ZMYM3Q14202 1370 aa27.56■■■□□ 2
TRIM47-204ENST00000587339 SPATA31D1Q6ZQQ2 1576 aa27.55■■■□□ 2
TRIM47-204ENST00000587339 POLR3GLQ9BT43 218 aa27.55■■■□□ 2
TRIM47-204ENST00000587339 SCAF11Q99590 1463 aaKnown RBP27.54■■■□□ 2
TRIM47-204ENST00000587339 IQGAP1P46940 1657 aa27.53■■■□□ 2
TRIM47-204ENST00000587339 TMEM131LA2VDJ0 1609 aa27.53■■■□□ 2
TRIM47-204ENST00000587339 PIK3C2GO75747 1445 aa27.53■■■□□ 2
TRIM47-204ENST00000587339 VGFO15240 615 aaPredicted RBP27.53■■■□□ 2
TRIM47-204ENST00000587339 NEXMIFQ5QGS0 1516 aa27.52■■■□□ 2
TRIM47-204ENST00000587339 TESK2Q96S53 571 aa27.51■■□□□ 1.99
TRIM47-204ENST00000587339 YTHDC1Q96MU7 727 aaKnown RBP27.49■■□□□ 1.99
TRIM47-204ENST00000587339 STAG3Q9UJ98 1225 aa27.48■■□□□ 1.99
TRIM47-204ENST00000587339 EIF3AQ14152 1382 aaKnown RBP27.47■■□□□ 1.99
TRIM47-204ENST00000587339 C14orf93Q9H972 538 aaKnown RBP27.47■■□□□ 1.99
TRIM47-204ENST00000587339 NUTM2DQ5VT03 806 aaPredicted RBP27.46■■□□□ 1.99
TRIM47-204ENST00000587339 MYO5BQ9ULV0 1848 aa27.46■■□□□ 1.99
TRIM47-204ENST00000587339 ZFYVE9O95405 1425 aa27.45■■□□□ 1.98
TRIM47-204ENST00000587339 SETBP1Q9Y6X0 1596 aa27.45■■□□□ 1.98
TRIM47-204ENST00000587339 TMF1P82094 1093 aa27.44■■□□□ 1.98
TRIM47-204ENST00000587339 CCER2I3L3R5 266 aa27.43■■□□□ 1.98
TRIM47-204ENST00000587339 DISP3Q9P2K9 1392 aa27.41■■□□□ 1.98
TRIM47-204ENST00000587339 A2ML1A8K2U0 1454 aa27.39■■□□□ 1.98
TRIM47-204ENST00000587339 CENPBP07199 599 aaPredicted RBP27.38■■□□□ 1.97
TRIM47-204ENST00000587339 TNRQ92752 1358 aa27.38■■□□□ 1.97
TRIM47-204ENST00000587339 ADGRB1O14514 1584 aa27.37■■□□□ 1.97
TRIM47-204ENST00000587339 TMEM132EQ6IEE7 984 aa27.34■■□□□ 1.97
TRIM47-204ENST00000587339 PRKRIP1Q9H875 184 aaPredicted RBP27.34■■□□□ 1.97
TRIM47-204ENST00000587339 SLC24A1O60721 1099 aa27.33■■□□□ 1.97
TRIM47-204ENST00000587339 CDCA8Q53HL2 280 aa27.31■■□□□ 1.96
TRIM47-204ENST00000587339 FER1L4A9Z1Z3 1794 aa27.31■■□□□ 1.96
TRIM47-204ENST00000587339 TRAK1Q9UPV9 953 aa27.31■■□□□ 1.96
TRIM47-204ENST00000587339 RIMS2Q9UQ26 1411 aa27.3■■□□□ 1.96
TRIM47-204ENST00000587339 CEBPAP49715 358 aaPredicted RBP27.29■■□□□ 1.96
TRIM47-204ENST00000587339 MYO3AQ8NEV4 1616 aa27.29■■□□□ 1.96
TRIM47-204ENST00000587339 CENPJQ9HC77 1338 aaPredicted RBP27.27■■□□□ 1.96
TRIM47-204ENST00000587339 C3P01024 1663 aa27.27■■□□□ 1.96
TRIM47-204ENST00000587339 SENP3Q9H4L4 574 aaPredicted RBP27.26■■□□□ 1.95
TRIM47-204ENST00000587339 SBNO2Q9Y2G9 1366 aa27.26■■□□□ 1.95
TRIM47-204ENST00000587339 KDM5AP29375 1690 aaKnown RBP27.25■■□□□ 1.95
TRIM47-204ENST00000587339 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.24■■□□□ 1.95
TRIM47-204ENST00000587339 NLRP1Q9C000 1473 aa27.24■■□□□ 1.95
TRIM47-204ENST00000587339 HDGFP51858 240 aaKnown RBP27.22■■□□□ 1.95
TRIM47-204ENST00000587339 ALKQ9UM73 1620 aa27.21■■□□□ 1.95
TRIM47-204ENST00000587339 ASXL1Q8IXJ9 1541 aa27.21■■□□□ 1.95
TRIM47-204ENST00000587339 UBR1Q8IWV7 1749 aa27.2■■□□□ 1.94
TRIM47-204ENST00000587339 PLPPR3Q6T4P5 718 aa27.2■■□□□ 1.94
TRIM47-204ENST00000587339 CNGB1Q14028 1251 aaPredicted RBP27.18■■□□□ 1.94
TRIM47-204ENST00000587339 TMEM2Q9UHN6 1383 aa27.18■■□□□ 1.94
TRIM47-204ENST00000587339 PANK3Q9H999 370 aa27.18■■□□□ 1.94
TRIM47-204ENST00000587339 QRICH2Q9H0J4 1663 aa27.17■■□□□ 1.94
TRIM47-204ENST00000587339 ARHGEF28Q8N1W1 1705 aaKnown RBP27.17■■□□□ 1.94
TRIM47-204ENST00000587339 PER1O15534 1290 aaPredicted RBP27.16■■□□□ 1.94
TRIM47-204ENST00000587339 STK26Q9P289 416 aa27.16■■□□□ 1.94
TRIM47-204ENST00000587339 YTHDC2Q9H6S0 1430 aaKnown RBP27.15■■□□□ 1.94
TRIM47-204ENST00000587339 KTN1Q86UP2 1357 aaKnown RBP27.13■■□□□ 1.93
TRIM47-204ENST00000587339 CCDC184Q52MB2 194 aa27.1■■□□□ 1.93
TRIM47-204ENST00000587339 MRS2Q9HD23 443 aa27.1■■□□□ 1.93
TRIM47-204ENST00000587339 PTPRMP28827 1452 aa27.1■■□□□ 1.93
TRIM47-204ENST00000587339 MYOM1P52179 1685 aa27.09■■□□□ 1.93
TRIM47-204ENST00000587339 RALBP1Q15311 655 aa27.09■■□□□ 1.93
TRIM47-204ENST00000587339 RIMS1Q86UR5 1692 aaKnown RBP27.09■■□□□ 1.93
TRIM47-204ENST00000587339 NRXN3Q9Y4C0 1643 aa27.08■■□□□ 1.93
TRIM47-204ENST00000587339 SETD1AO15047 1707 aaKnown RBP27.07■■□□□ 1.92
TRIM47-204ENST00000587339 SAFB2Q14151 953 aaKnown RBP eCLIP27.06■■□□□ 1.92
TRIM47-204ENST00000587339 BCANQ96GW7 911 aa27.06■■□□□ 1.92
TRIM47-204ENST00000587339 EVC2Q86UK5 1308 aa27.06■■□□□ 1.92
TRIM47-204ENST00000587339 ADAMTSL3P82987 1691 aa27.05■■□□□ 1.92
TRIM47-204ENST00000587339 PRAM1Q96QH2 718 aa27.05■■□□□ 1.92
TRIM47-204ENST00000587339 POGKQ9P215 609 aa27.04■■□□□ 1.92
TRIM47-204ENST00000587339 KNSTRNQ9Y448 316 aa27.04■■□□□ 1.92
TRIM47-204ENST00000587339 LRPPRCP42704 1394 aaKnown RBP27.04■■□□□ 1.92
TRIM47-204ENST00000587339 THEMISQ8N1K5 641 aaPredicted RBP27.03■■□□□ 1.92
TRIM47-204ENST00000587339 EID1Q9Y6B2 187 aa27.03■■□□□ 1.92
TRIM47-204ENST00000587339 PARD3Q8TEW0 1356 aa27.03■■□□□ 1.92
TRIM47-204ENST00000587339 LTKP29376 864 aa27.02■■□□□ 1.92
TRIM47-204ENST00000587339 TXNDC2Q86VQ3 553 aa27.02■■□□□ 1.92
TRIM47-204ENST00000587339 SLIT1O75093 1534 aa27.02■■□□□ 1.92
TRIM47-204ENST00000587339 MYBBP1AQ9BQG0 1328 aaKnown RBP27.02■■□□□ 1.92
TRIM47-204ENST00000587339 PUS7Q96PZ0 661 aaKnown RBP27.02■■□□□ 1.92
TRIM47-204ENST00000587339 TULP4Q9NRJ4 1543 aa27.01■■□□□ 1.91
TRIM47-204ENST00000587339 METP08581 1390 aa27.01■■□□□ 1.91
TRIM47-204ENST00000587339 PLEKHG1Q9ULL1 1385 aa27.01■■□□□ 1.91
TRIM47-204ENST00000587339 CC2D1BQ5T0F9 858 aaKnown RBP27■■□□□ 1.91
TRIM47-204ENST00000587339 DLC1Q96QB1 1528 aa27■■□□□ 1.91
TRIM47-204ENST00000587339 ARHGAP23Q9P227 1491 aa27■■□□□ 1.91
TRIM47-204ENST00000587339 ABCC11Q96J66 1382 aa27■■□□□ 1.91
TRIM47-204ENST00000587339 MINK1Q8N4C8 1332 aaPredicted RBP26.96■■□□□ 1.91
TRIM47-204ENST00000587339 ADAMTS13Q76LX8 1427 aa26.96■■□□□ 1.91
TRIM47-204ENST00000587339 FAM9BQ8IZU0 186 aa26.96■■□□□ 1.91
TRIM47-204ENST00000587339 TMC1Q8TDI8 760 aa26.96■■□□□ 1.91
TRIM47-204ENST00000587339 CEP170BQ9Y4F5 1589 aaPredicted RBP26.95■■□□□ 1.91
TRIM47-204ENST00000587339 AMER1Q5JTC6 1135 aaPredicted RBP26.94■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms