RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 COPS2P61201 443 aa11.25□□□□□ -0.61
SMCHD1-208ENST00000583344 VSIG10Q8N0Z9 540 aa11.23□□□□□ -0.61
SMCHD1-208ENST00000583344 PXYLP1Q8TE99 480 aa11.23□□□□□ -0.61
SMCHD1-208ENST00000583344 GNPATO15228 680 aa11.22□□□□□ -0.61
SMCHD1-208ENST00000583344 NKX2-3Q8TAU0 364 aa11.22□□□□□ -0.61
SMCHD1-208ENST00000583344 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.2□□□□□ -0.62
SMCHD1-208ENST00000583344 METTL3Q86U44 580 aaKnown RBP11.2□□□□□ -0.62
SMCHD1-208ENST00000583344 OATP04181 439 aa11.19□□□□□ -0.62
SMCHD1-208ENST00000583344 IRX2Q9BZI1 471 aaPredicted RBP11.19□□□□□ -0.62
SMCHD1-208ENST00000583344 PCDHB3Q9Y5E6 796 aa11.19□□□□□ -0.62
SMCHD1-208ENST00000583344 CFHP08603 1231 aa11.18□□□□□ -0.62
SMCHD1-208ENST00000583344 SLC10A3P09131 477 aa11.18□□□□□ -0.62
SMCHD1-208ENST00000583344 PPP1R18Q6NYC8 613 aa11.18□□□□□ -0.62
SMCHD1-208ENST00000583344 BLOC1S3Q6QNY0 202 aa11.18□□□□□ -0.62
SMCHD1-208ENST00000583344 GPIHBP1Q8IV16 184 aa11.18□□□□□ -0.62
SMCHD1-208ENST00000583344 PRR14Q9BWN1 585 aa11.18□□□□□ -0.62
SMCHD1-208ENST00000583344 NLRP7Q8WX94 980 aa11.17□□□□□ -0.62
SMCHD1-208ENST00000583344 ZPR1O75312 459 aa11.15□□□□□ -0.62
SMCHD1-208ENST00000583344 ACTN4O43707 911 aaKnown RBP11.14□□□□□ -0.63
SMCHD1-208ENST00000583344 KMT5BQ4FZB7 885 aa11.14□□□□□ -0.63
SMCHD1-208ENST00000583344 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.13□□□□□ -0.63
SMCHD1-208ENST00000583344 TLL1O43897 1013 aa11.12□□□□□ -0.63
SMCHD1-208ENST00000583344 PHOX2BQ99453 314 aa11.11□□□□□ -0.63
SMCHD1-208ENST00000583344 PRKD2Q9BZL6 878 aa11.1□□□□□ -0.63
SMCHD1-208ENST00000583344 RDH13Q8NBN7 331 aa11.07□□□□□ -0.64
SMCHD1-208ENST00000583344 DAXXQ9UER7 740 aaPredicted RBP11.07□□□□□ -0.64
SMCHD1-208ENST00000583344 DDX11L8A8MPP1 907 aa11.06□□□□□ -0.64
SMCHD1-208ENST00000583344 GGCXP38435 758 aa11.06□□□□□ -0.64
SMCHD1-208ENST00000583344 PUS10Q3MIT2 529 aaKnown RBP11.06□□□□□ -0.64
SMCHD1-208ENST00000583344 TULP1O00294 542 aaPredicted RBP11.05□□□□□ -0.64
SMCHD1-208ENST00000583344 RSPH4AQ5TD94 716 aa11.03□□□□□ -0.64
SMCHD1-208ENST00000583344 RNF223E7ERA6 249 aa11.02□□□□□ -0.65
SMCHD1-208ENST00000583344 NR1I2O75469 434 aa11.02□□□□□ -0.65
SMCHD1-208ENST00000583344 MAP2K5Q13163 448 aa11.02□□□□□ -0.65
SMCHD1-208ENST00000583344 V9GY48 417 aaPredicted RBP11.02□□□□□ -0.65
SMCHD1-208ENST00000583344 S1PR4O95977 384 aa11.01□□□□□ -0.65
SMCHD1-208ENST00000583344 TMUB1Q9BVT8 246 aa11.01□□□□□ -0.65
SMCHD1-208ENST00000583344 ADH1BP00325 375 aa11□□□□□ -0.65
SMCHD1-208ENST00000583344 SCUBE3Q8IX30 993 aa11□□□□□ -0.65
SMCHD1-208ENST00000583344 PPEF1O14829 653 aaPredicted RBP10.99□□□□□ -0.65
SMCHD1-208ENST00000583344 FUT2Q10981 343 aa10.99□□□□□ -0.65
SMCHD1-208ENST00000583344 Q6ZNB5 142 aa10.99□□□□□ -0.65
SMCHD1-208ENST00000583344 GFRA3O60609 400 aa10.98□□□□□ -0.65
SMCHD1-208ENST00000583344 SULF1Q8IWU6 871 aa10.98□□□□□ -0.65
SMCHD1-208ENST00000583344 IRF6O14896 467 aa10.97□□□□□ -0.65
SMCHD1-208ENST00000583344 GCGRP47871 477 aa10.97□□□□□ -0.65
SMCHD1-208ENST00000583344 EMID1Q96A84 441 aaPredicted RBP10.97□□□□□ -0.65
SMCHD1-208ENST00000583344 MORN1Q5T089 497 aa10.96□□□□□ -0.65
SMCHD1-208ENST00000583344 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.96□□□□□ -0.65
SMCHD1-208ENST00000583344 CCDC102AQ96A19 550 aa10.95□□□□□ -0.66
SMCHD1-208ENST00000583344 MDM2Q00987 491 aaPredicted RBP10.94□□□□□ -0.66
SMCHD1-208ENST00000583344 ANKLE1Q8NAG6 615 aa10.94□□□□□ -0.66
SMCHD1-208ENST00000583344 SPSB2Q99619 263 aa10.94□□□□□ -0.66
SMCHD1-208ENST00000583344 SLC6A16Q9GZN6 736 aa10.94□□□□□ -0.66
SMCHD1-208ENST00000583344 MINK1Q8N4C8 1332 aaPredicted RBP10.93□□□□□ -0.66
SMCHD1-208ENST00000583344 ATP6V1AP38606 617 aa10.93□□□□□ -0.66
SMCHD1-208ENST00000583344 LAPTM4AQ15012 233 aa10.93□□□□□ -0.66
SMCHD1-208ENST00000583344 LMOD2Q6P5Q4 547 aa10.93□□□□□ -0.66
SMCHD1-208ENST00000583344 SLC19A1P41440 591 aa10.92□□□□□ -0.66
SMCHD1-208ENST00000583344 SLC27A5Q9Y2P5 690 aa10.92□□□□□ -0.66
SMCHD1-208ENST00000583344 CD46P15529 392 aa10.91□□□□□ -0.66
SMCHD1-208ENST00000583344 NRG2O14511 850 aaPredicted RBP10.9□□□□□ -0.66
SMCHD1-208ENST00000583344 LCE2BO14633 110 aa10.9□□□□□ -0.66
SMCHD1-208ENST00000583344 PLA2G2CQ5R387 149 aa10.9□□□□□ -0.66
SMCHD1-208ENST00000583344 LIAT1Q6ZQX7 453 aa10.9□□□□□ -0.66
SMCHD1-208ENST00000583344 THAP11Q96EK4 314 aa10.9□□□□□ -0.66
SMCHD1-208ENST00000583344 PDZRN3Q9UPQ7 1066 aa10.89□□□□□ -0.67
SMCHD1-208ENST00000583344 SPRYD7Q5W111 196 aa10.88□□□□□ -0.67
SMCHD1-208ENST00000583344 RNF19BQ6ZMZ0 732 aa10.87□□□□□ -0.67
SMCHD1-208ENST00000583344 TRIM67Q6ZTA4 783 aa10.87□□□□□ -0.67
SMCHD1-208ENST00000583344 FMNL1O95466 1100 aaPredicted RBP10.86□□□□□ -0.67
SMCHD1-208ENST00000583344 FAM160A2Q8N612 972 aaPredicted RBP10.86□□□□□ -0.67
SMCHD1-208ENST00000583344 PRDM9Q9NQV7 894 aa10.86□□□□□ -0.67
SMCHD1-208ENST00000583344 BRICD5Q6PL45 260 aa10.84□□□□□ -0.67
SMCHD1-208ENST00000583344 HLA-CQ95604 372 aa10.84□□□□□ -0.67
SMCHD1-208ENST00000583344 KDM4AO75164 1064 aa10.83□□□□□ -0.68
SMCHD1-208ENST00000583344 GRIPAP1Q4V328 841 aa10.83□□□□□ -0.68
SMCHD1-208ENST00000583344 ZNF697Q5TEC3 545 aa10.83□□□□□ -0.68
SMCHD1-208ENST00000583344 ZNF598Q86UK7 904 aaKnown RBP10.83□□□□□ -0.68
SMCHD1-208ENST00000583344 GPCPD1Q9NPB8 672 aa10.83□□□□□ -0.68
SMCHD1-208ENST00000583344 FCF1Q9Y324 198 aaKnown RBP10.83□□□□□ -0.68
SMCHD1-208ENST00000583344 CLCN1P35523 988 aa10.82□□□□□ -0.68
SMCHD1-208ENST00000583344 TRAF7Q6Q0C0 670 aa10.82□□□□□ -0.68
SMCHD1-208ENST00000583344 FAM217BQ9NTX9 383 aaPredicted RBP10.82□□□□□ -0.68
SMCHD1-208ENST00000583344 KRI1Q8N9T8 703 aaKnown RBP10.81□□□□□ -0.68
SMCHD1-208ENST00000583344 ZC3H15Q8WU90 426 aaKnown RBP10.81□□□□□ -0.68
SMCHD1-208ENST00000583344 REPIN1Q9BWE0 567 aaKnown RBP10.81□□□□□ -0.68
SMCHD1-208ENST00000583344 SALL2Q9Y467 1007 aaPredicted RBP10.81□□□□□ -0.68
SMCHD1-208ENST00000583344 BARGINQ6ZT62 677 aa10.8□□□□□ -0.68
SMCHD1-208ENST00000583344 TNFRSF10AO00220 468 aa10.79□□□□□ -0.68
SMCHD1-208ENST00000583344 ZMYND10O75800 440 aa10.79□□□□□ -0.68
SMCHD1-208ENST00000583344 GUCA2AQ02747 115 aa10.78□□□□□ -0.68
SMCHD1-208ENST00000583344 MSS51Q4VC12 460 aa10.78□□□□□ -0.68
SMCHD1-208ENST00000583344 HOXA2O43364 376 aa10.77□□□□□ -0.69
SMCHD1-208ENST00000583344 Q3C1V9 767 aa10.77□□□□□ -0.69
SMCHD1-208ENST00000583344 GDF9O60383 454 aa10.76□□□□□ -0.69
SMCHD1-208ENST00000583344 USP46P62068 366 aa10.76□□□□□ -0.69
SMCHD1-208ENST00000583344 PRR20EP86478 221 aa10.75□□□□□ -0.69
SMCHD1-208ENST00000583344 PRR20CP86479 221 aa10.75□□□□□ -0.69
SMCHD1-208ENST00000583344 PRR20DP86480 221 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms