RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 ZNF316A6NFI3 1004 aaPredicted RBP16.47■□□□□ 0.23
SS18-221ENST00000582448 MLECQ14165 292 aa16.47■□□□□ 0.23
SS18-221ENST00000582448 TSHZ2Q9NRE2 1034 aa16.47■□□□□ 0.23
SS18-221ENST00000582448 RAPGEF6Q8TEU7 1601 aa16.46■□□□□ 0.23
SS18-221ENST00000582448 LHX6Q9UPM6 363 aa16.45■□□□□ 0.22
SS18-221ENST00000582448 FHOD3Q2V2M9 1422 aa16.45■□□□□ 0.22
SS18-221ENST00000582448 EMILIN3Q9NT22 766 aa16.44■□□□□ 0.22
SS18-221ENST00000582448 DENND4BO75064 1496 aaPredicted RBP16.43■□□□□ 0.22
SS18-221ENST00000582448 BCORL1Q5H9F3 1711 aa16.43■□□□□ 0.22
SS18-221ENST00000582448 MADDQ8WXG6 1647 aa16.43■□□□□ 0.22
SS18-221ENST00000582448 AKNAQ7Z591 1439 aa16.43■□□□□ 0.22
SS18-221ENST00000582448 NUP153P49790 1475 aaKnown RBP16.42■□□□□ 0.22
SS18-221ENST00000582448 ATP1B4Q9UN42 357 aaPredicted RBP16.42■□□□□ 0.22
SS18-221ENST00000582448 TBC1D12O60347 775 aa16.41■□□□□ 0.22
SS18-221ENST00000582448 PCF11O94913 1555 aaKnown RBP16.41■□□□□ 0.22
SS18-221ENST00000582448 SAMD9Q5K651 1589 aa16.41■□□□□ 0.22
SS18-221ENST00000582448 FRMPD1Q5SYB0 1578 aa16.4■□□□□ 0.22
SS18-221ENST00000582448 KRTAP3-3Q9BYR6 98 aa16.4■□□□□ 0.22
SS18-221ENST00000582448 KRTAP3-2Q9BYR7 98 aa16.4■□□□□ 0.22
SS18-221ENST00000582448 LMTK3Q96Q04 1460 aa16.4■□□□□ 0.22
SS18-221ENST00000582448 RIMS1Q86UR5 1692 aaKnown RBP16.38■□□□□ 0.21
SS18-221ENST00000582448 FANCAO15360 1455 aa16.38■□□□□ 0.21
SS18-221ENST00000582448 CAMK2BQ13554 666 aa16.38■□□□□ 0.21
SS18-221ENST00000582448 POGZQ7Z3K3 1410 aa16.37■□□□□ 0.21
SS18-221ENST00000582448 PLCB2Q00722 1185 aa16.37■□□□□ 0.21
SS18-221ENST00000582448 ZNF687Q8N1G0 1237 aa16.36■□□□□ 0.21
SS18-221ENST00000582448 YEATS2Q9ULM3 1422 aa16.36■□□□□ 0.21
SS18-221ENST00000582448 CERKQ8TCT0 537 aa16.34■□□□□ 0.21
SS18-221ENST00000582448 MYT1LQ9UL68 1186 aa16.34■□□□□ 0.21
SS18-221ENST00000582448 ARHGEF40Q8TER5 1519 aa16.34■□□□□ 0.21
SS18-221ENST00000582448 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.33■□□□□ 0.2
SS18-221ENST00000582448 SCAPERQ9BY12 1400 aa16.31■□□□□ 0.2
SS18-221ENST00000582448 CEBPAP49715 358 aaPredicted RBP16.31■□□□□ 0.2
SS18-221ENST00000582448 MAP3K9P80192 1104 aa16.31■□□□□ 0.2
SS18-221ENST00000582448 RICTORQ6R327 1708 aa16.31■□□□□ 0.2
SS18-221ENST00000582448 ZFYVE16Q7Z3T8 1539 aa16.3■□□□□ 0.2
SS18-221ENST00000582448 EVI5O60447 810 aa16.29■□□□□ 0.2
SS18-221ENST00000582448 UBTFP17480 764 aaKnown RBP16.29■□□□□ 0.2
SS18-221ENST00000582448 EFCAB2Q5VUJ9 269 aa16.28■□□□□ 0.2
SS18-221ENST00000582448 CFAP74Q9C0B2 1584 aa16.28■□□□□ 0.2
SS18-221ENST00000582448 EFCAB5A4FU69 1503 aa16.28■□□□□ 0.2
SS18-221ENST00000582448 CDK13Q14004 1512 aaKnown RBP16.28■□□□□ 0.2
SS18-221ENST00000582448 EEA1Q15075 1411 aa16.28■□□□□ 0.2
SS18-221ENST00000582448 TTC37Q6PGP7 1564 aa16.27■□□□□ 0.2
SS18-221ENST00000582448 POTEEQ6S8J3 1075 aa16.27■□□□□ 0.2
SS18-221ENST00000582448 ANO8Q9HCE9 1232 aaPredicted RBP16.27■□□□□ 0.2
SS18-221ENST00000582448 DPYSL4O14531 572 aa16.26■□□□□ 0.19
SS18-221ENST00000582448 PLSCR2Q9NRY7 297 aa16.26■□□□□ 0.19
SS18-221ENST00000582448 WDR70Q9NW82 654 aa16.26■□□□□ 0.19
SS18-221ENST00000582448 MAGI2Q86UL8 1455 aa16.26■□□□□ 0.19
SS18-221ENST00000582448 PLCH2O75038 1416 aa16.26■□□□□ 0.19
SS18-221ENST00000582448 HECW1Q76N89 1606 aa16.26■□□□□ 0.19
SS18-221ENST00000582448 CDK11AQ9UQ88 783 aaPredicted RBP16.24■□□□□ 0.19
SS18-221ENST00000582448 SIGLEC1Q9BZZ2 1709 aa16.24■□□□□ 0.19
SS18-221ENST00000582448 ZMYM4Q5VZL5 1548 aa16.24■□□□□ 0.19
SS18-221ENST00000582448 E2F4Q16254 413 aa16.23■□□□□ 0.19
SS18-221ENST00000582448 AFAP1Q8N556 730 aa16.23■□□□□ 0.19
SS18-221ENST00000582448 ATP10AO60312 1499 aa16.22■□□□□ 0.19
SS18-221ENST00000582448 PSDA5PKW4 1024 aaPredicted RBP16.22■□□□□ 0.19
SS18-221ENST00000582448 C9orf84Q5VXU9 1444 aa16.2■□□□□ 0.18
SS18-221ENST00000582448 LOC105371045A0A1W2PR82 267 aa16.2■□□□□ 0.18
SS18-221ENST00000582448 AXIN2Q9Y2T1 843 aa16.2■□□□□ 0.18
SS18-221ENST00000582448 FER1L4A9Z1Z3 1794 aa16.2■□□□□ 0.18
SS18-221ENST00000582448 SPNS2Q8IVW8 549 aa16.18■□□□□ 0.18
SS18-221ENST00000582448 ZNF454Q8N9F8 522 aa16.18■□□□□ 0.18
SS18-221ENST00000582448 ESF1Q9H501 851 aaKnown RBP16.18■□□□□ 0.18
SS18-221ENST00000582448 DISP3Q9P2K9 1392 aa16.17■□□□□ 0.18
SS18-221ENST00000582448 FOSBP53539 338 aa16.17■□□□□ 0.18
SS18-221ENST00000582448 PPP4R3BQ5MIZ7 849 aa16.17■□□□□ 0.18
SS18-221ENST00000582448 ARHGEF12Q9NZN5 1544 aa16.15■□□□□ 0.18
SS18-221ENST00000582448 FMN1Q68DA7 1419 aa16.14■□□□□ 0.17
SS18-221ENST00000582448 UHRF1BP1Q6BDS2 1440 aa16.14■□□□□ 0.17
SS18-221ENST00000582448 ILDR2Q71H61 639 aa16.14■□□□□ 0.17
SS18-221ENST00000582448 ARHGAP5Q13017 1502 aa16.14■□□□□ 0.17
SS18-221ENST00000582448 PBX2P40425 430 aa16.13■□□□□ 0.17
SS18-221ENST00000582448 ZNF518AQ6AHZ1 1483 aa16.12■□□□□ 0.17
SS18-221ENST00000582448 HAP1P54257 671 aaPredicted RBP16.12■□□□□ 0.17
SS18-221ENST00000582448 ARIH1Q9Y4X5 557 aaPredicted RBP16.11■□□□□ 0.17
SS18-221ENST00000582448 MYO5CQ9NQX4 1742 aa16.11■□□□□ 0.17
SS18-221ENST00000582448 CLIP1P30622 1438 aa16.11■□□□□ 0.17
SS18-221ENST00000582448 TROQ12816 1431 aaPredicted RBP16.11■□□□□ 0.17
SS18-221ENST00000582448 KIF14Q15058 1648 aa16.1■□□□□ 0.17
SS18-221ENST00000582448 PSEN2P49810 448 aa16.1■□□□□ 0.17
SS18-221ENST00000582448 LSM11P83369 360 aaKnown RBP eCLIP16.1■□□□□ 0.17
SS18-221ENST00000582448 ARHGAP35Q9NRY4 1499 aa16.1■□□□□ 0.17
SS18-221ENST00000582448 PREX1Q8TCU6 1659 aa16.09■□□□□ 0.17
SS18-221ENST00000582448 ARHGAP33O14559 1287 aa16.09■□□□□ 0.17
SS18-221ENST00000582448 PCDHGA10Q9Y5H3 936 aa16.09■□□□□ 0.17
SS18-221ENST00000582448 PDIA6Q15084 440 aa16.08■□□□□ 0.16
SS18-221ENST00000582448 ANKRD13DQ6ZTN6 518 aa16.08■□□□□ 0.16
SS18-221ENST00000582448 ZNF777Q9ULD5 760 aaPredicted RBP16.08■□□□□ 0.16
SS18-221ENST00000582448 DMRTA1Q5VZB9 504 aa16.07■□□□□ 0.16
SS18-221ENST00000582448 ADAM33Q9BZ11 813 aa16.06■□□□□ 0.16
SS18-221ENST00000582448 STRCQ7RTU9 1775 aa16.05■□□□□ 0.16
SS18-221ENST00000582448 TRAPPC8Q9Y2L5 1435 aa16.05■□□□□ 0.16
SS18-221ENST00000582448 SOCS7O14512 581 aa16.05■□□□□ 0.16
SS18-221ENST00000582448 KCNV2Q8TDN2 545 aa16.05■□□□□ 0.16
SS18-221ENST00000582448 ZDHHC16Q969W1 377 aa16.05■□□□□ 0.16
SS18-221ENST00000582448 MMRN1Q13201 1228 aa16.04■□□□□ 0.16
SS18-221ENST00000582448 BCL2L12Q9HB09 334 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms