RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 CRBNQ96SW2 442 aa13.89□□□□□ -0.19
TOP3A-209ENST00000580095 ADGRL1O94910 1474 aa13.88□□□□□ -0.19
TOP3A-209ENST00000580095 TNNT2P45379 298 aaPredicted RBP13.88□□□□□ -0.19
TOP3A-209ENST00000580095 PDE3BQ13370 1112 aa13.88□□□□□ -0.19
TOP3A-209ENST00000580095 CLTCL1P53675 1640 aa13.88□□□□□ -0.19
TOP3A-209ENST00000580095 EIF2AK4Q9P2K8 1649 aaKnown RBP13.88□□□□□ -0.19
TOP3A-209ENST00000580095 PLEKHH1Q9ULM0 1364 aa13.87□□□□□ -0.19
TOP3A-209ENST00000580095 NBR1Q14596 966 aa13.87□□□□□ -0.19
TOP3A-209ENST00000580095 SCAF11Q99590 1463 aaKnown RBP13.86□□□□□ -0.19
TOP3A-209ENST00000580095 MADDQ8WXG6 1647 aa13.86□□□□□ -0.19
TOP3A-209ENST00000580095 TMEM132EQ6IEE7 984 aa13.86□□□□□ -0.19
TOP3A-209ENST00000580095 TRAK1Q9UPV9 953 aa13.86□□□□□ -0.19
TOP3A-209ENST00000580095 RTEL1-TNFRSF6BF6WH68 1400 aa13.86□□□□□ -0.19
TOP3A-209ENST00000580095 PTPRTO14522 1441 aa13.86□□□□□ -0.19
TOP3A-209ENST00000580095 ASXL2Q76L83 1435 aa13.86□□□□□ -0.19
TOP3A-209ENST00000580095 ATP7AQ04656 1500 aa13.86□□□□□ -0.19
TOP3A-209ENST00000580095 CARD14Q9BXL6 1004 aa13.85□□□□□ -0.19
TOP3A-209ENST00000580095 TRPM2O94759 1503 aa13.85□□□□□ -0.19
TOP3A-209ENST00000580095 BLMP54132 1417 aaPredicted RBP13.85□□□□□ -0.19
TOP3A-209ENST00000580095 ARAP3Q8WWN8 1544 aa13.84□□□□□ -0.19
TOP3A-209ENST00000580095 CDCA8Q53HL2 280 aa13.84□□□□□ -0.19
TOP3A-209ENST00000580095 NOP58Q9Y2X3 529 aaKnown RBP13.84□□□□□ -0.19
TOP3A-209ENST00000580095 APAF1O14727 1248 aa13.84□□□□□ -0.19
TOP3A-209ENST00000580095 SPINK5Q9NQ38 1064 aaPredicted RBP13.84□□□□□ -0.19
TOP3A-209ENST00000580095 LAMC1P11047 1609 aa13.83□□□□□ -0.2
TOP3A-209ENST00000580095 DAXXQ9UER7 740 aaPredicted RBP13.83□□□□□ -0.2
TOP3A-209ENST00000580095 ANP32AP39687 249 aaKnown RBP13.82□□□□□ -0.2
TOP3A-209ENST00000580095 RNF17Q9BXT8 1623 aaKnown RBP13.82□□□□□ -0.2
TOP3A-209ENST00000580095 RAPGEF3O95398 923 aa13.82□□□□□ -0.2
TOP3A-209ENST00000580095 ABCA9Q8IUA7 1624 aa13.81□□□□□ -0.2
TOP3A-209ENST00000580095 NPM1P06748 294 aaKnown RBP eCLIP13.81□□□□□ -0.2
TOP3A-209ENST00000580095 DUSP27Q5VZP5 1158 aa13.81□□□□□ -0.2
TOP3A-209ENST00000580095 DMRT2Q9Y5R5 561 aa13.81□□□□□ -0.2
TOP3A-209ENST00000580095 SAFB2Q14151 953 aaKnown RBP eCLIP13.8□□□□□ -0.2
TOP3A-209ENST00000580095 NEUROD2Q15784 382 aa13.8□□□□□ -0.2
TOP3A-209ENST00000580095 SLC12A5Q9H2X9 1139 aa13.8□□□□□ -0.2
TOP3A-209ENST00000580095 SPHKAPQ2M3C7 1700 aa13.8□□□□□ -0.2
TOP3A-209ENST00000580095 GOLGA2Q08379 1002 aa13.8□□□□□ -0.2
TOP3A-209ENST00000580095 EIF3AQ14152 1382 aaKnown RBP13.8□□□□□ -0.2
TOP3A-209ENST00000580095 GLI2P10070 1586 aa13.79□□□□□ -0.2
TOP3A-209ENST00000580095 NOS1P29475 1434 aa13.79□□□□□ -0.2
TOP3A-209ENST00000580095 PDE4AP27815 886 aa13.79□□□□□ -0.2
TOP3A-209ENST00000580095 CFAP65Q6ZU64 1925 aaKnown RBP13.78□□□□□ -0.2
TOP3A-209ENST00000580095 PLEKHG5O94827 1062 aa13.78□□□□□ -0.2
TOP3A-209ENST00000580095 IPO9Q96P70 1041 aaKnown RBP13.78□□□□□ -0.2
TOP3A-209ENST00000580095 IQGAP1P46940 1657 aa13.78□□□□□ -0.2
TOP3A-209ENST00000580095 ASXL1Q8IXJ9 1541 aa13.78□□□□□ -0.2
TOP3A-209ENST00000580095 RRP7AQ9Y3A4 280 aaKnown RBP13.77□□□□□ -0.2
TOP3A-209ENST00000580095 INO80Q9ULG1 1556 aaPredicted RBP13.77□□□□□ -0.21
TOP3A-209ENST00000580095 ZMYM4Q5VZL5 1548 aa13.77□□□□□ -0.21
TOP3A-209ENST00000580095 TET3O43151 1660 aa13.77□□□□□ -0.21
TOP3A-209ENST00000580095 BCAR3O75815 825 aa13.77□□□□□ -0.21
TOP3A-209ENST00000580095 ERVK-7P63135 1459 aa13.76□□□□□ -0.21
TOP3A-209ENST00000580095 MROH1Q8NDA8 1641 aa13.76□□□□□ -0.21
TOP3A-209ENST00000580095 CEP152O94986 1710 aa13.75□□□□□ -0.21
TOP3A-209ENST00000580095 CENPJQ9HC77 1338 aaPredicted RBP13.75□□□□□ -0.21
TOP3A-209ENST00000580095 STAC3Q96MF2 364 aa13.75□□□□□ -0.21
TOP3A-209ENST00000580095 ZBTB47Q9UFB7 747 aaPredicted RBP13.75□□□□□ -0.21
TOP3A-209ENST00000580095 DEPDC5O75140 1603 aa13.75□□□□□ -0.21
TOP3A-209ENST00000580095 ZNF521Q96K83 1311 aa13.75□□□□□ -0.21
TOP3A-209ENST00000580095 TCERG1O14776 1098 aaKnown RBP13.75□□□□□ -0.21
TOP3A-209ENST00000580095 SLFN5Q08AF3 891 aa13.74□□□□□ -0.21
TOP3A-209ENST00000580095 VWDEQ8N2E2 1590 aa13.74□□□□□ -0.21
TOP3A-209ENST00000580095 CD109Q6YHK3 1445 aa13.74□□□□□ -0.21
TOP3A-209ENST00000580095 STK26Q9P289 416 aa13.74□□□□□ -0.21
TOP3A-209ENST00000580095 NPATQ14207 1427 aa13.73□□□□□ -0.21
TOP3A-209ENST00000580095 ABCA6Q8N139 1617 aa13.73□□□□□ -0.21
TOP3A-209ENST00000580095 SYNMO15061 1565 aa13.73□□□□□ -0.21
TOP3A-209ENST00000580095 MORC1Q86VD1 984 aa13.73□□□□□ -0.21
TOP3A-209ENST00000580095 BACH2Q9BYV9 841 aa13.73□□□□□ -0.21
TOP3A-209ENST00000580095 PPRC1Q5VV67 1664 aaKnown RBP13.72□□□□□ -0.21
TOP3A-209ENST00000580095 MAP3K4Q9Y6R4 1608 aa13.71□□□□□ -0.21
TOP3A-209ENST00000580095 KIDINS220Q9ULH0 1771 aa13.71□□□□□ -0.21
TOP3A-209ENST00000580095 EFCAB6Q5THR3 1501 aa13.71□□□□□ -0.21
TOP3A-209ENST00000580095 MYOM1P52179 1685 aa13.71□□□□□ -0.21
TOP3A-209ENST00000580095 PIK3C2GO75747 1445 aa13.71□□□□□ -0.21
TOP3A-209ENST00000580095 DNAJC5Q9H3Z4 198 aa13.71□□□□□ -0.21
TOP3A-209ENST00000580095 LAS1LQ9Y4W2 734 aaKnown RBP13.71□□□□□ -0.21
TOP3A-209ENST00000580095 ZNF518AQ6AHZ1 1483 aa13.71□□□□□ -0.22
TOP3A-209ENST00000580095 CFAP74Q9C0B2 1584 aa13.71□□□□□ -0.22
TOP3A-209ENST00000580095 NSD3Q9BZ95 1437 aa13.71□□□□□ -0.22
TOP3A-209ENST00000580095 RGS3P49796 1198 aa13.7□□□□□ -0.22
TOP3A-209ENST00000580095 CYB5RLQ6IPT4 315 aa13.7□□□□□ -0.22
TOP3A-209ENST00000580095 MROH2AA6NES4 1674 aa13.7□□□□□ -0.22
TOP3A-209ENST00000580095 C14orf93Q9H972 538 aaKnown RBP13.7□□□□□ -0.22
TOP3A-209ENST00000580095 CABP2Q9NPB3 220 aa13.7□□□□□ -0.22
TOP3A-209ENST00000580095 DIP2BQ9P265 1576 aa13.69□□□□□ -0.22
TOP3A-209ENST00000580095 INSRP06213 1382 aa13.69□□□□□ -0.22
TOP3A-209ENST00000580095 MTHFSP49914 203 aa13.68□□□□□ -0.22
TOP3A-209ENST00000580095 BCL2L13Q9BXK5 485 aa13.68□□□□□ -0.22
TOP3A-209ENST00000580095 MYOM2P54296 1465 aa13.68□□□□□ -0.22
TOP3A-209ENST00000580095 SLC4A3P48751 1232 aa13.67□□□□□ -0.22
TOP3A-209ENST00000580095 FRAT1Q92837 279 aaPredicted RBP13.67□□□□□ -0.22
TOP3A-209ENST00000580095 KDM5AP29375 1690 aaKnown RBP13.67□□□□□ -0.22
TOP3A-209ENST00000580095 POGZQ7Z3K3 1410 aa13.67□□□□□ -0.22
TOP3A-209ENST00000580095 NPC1L1Q9UHC9 1359 aa13.67□□□□□ -0.22
TOP3A-209ENST00000580095 DEKP35659 375 aaKnown RBP13.67□□□□□ -0.22
TOP3A-209ENST00000580095 WWC1Q8IX03 1113 aa13.67□□□□□ -0.22
TOP3A-209ENST00000580095 PANK1Q8TE04 598 aa13.67□□□□□ -0.22
TOP3A-209ENST00000580095 KDM2BQ8NHM5 1336 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms