RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 MCM6Q14566 821 aa10.05□□□□□ -0.8
VPS53-217ENST00000575100 GOPCQ9HD26 462 aa10.05□□□□□ -0.8
VPS53-217ENST00000575100 PREX1Q8TCU6 1659 aa10.04□□□□□ -0.8
VPS53-217ENST00000575100 GPIHBP1Q8IV16 184 aa10.04□□□□□ -0.8
VPS53-217ENST00000575100 TIAM1Q13009 1591 aa10.03□□□□□ -0.8
VPS53-217ENST00000575100 ATP10AO60312 1499 aa10.03□□□□□ -0.8
VPS53-217ENST00000575100 C9orf84Q5VXU9 1444 aa10.03□□□□□ -0.8
VPS53-217ENST00000575100 SCAPERQ9BY12 1400 aa10.03□□□□□ -0.8
VPS53-217ENST00000575100 ZNF692Q9BU19 519 aaPredicted RBP10.03□□□□□ -0.8
VPS53-217ENST00000575100 KDM5CP41229 1560 aa10.03□□□□□ -0.8
VPS53-217ENST00000575100 KIF14Q15058 1648 aa10.02□□□□□ -0.8
VPS53-217ENST00000575100 REREQ9P2R6 1566 aa10.02□□□□□ -0.8
VPS53-217ENST00000575100 ABCB7O75027 752 aa10.02□□□□□ -0.81
VPS53-217ENST00000575100 CHRM1P11229 460 aaPredicted RBP10.01□□□□□ -0.81
VPS53-217ENST00000575100 RBM26Q5T8P6 1007 aaKnown RBP10.01□□□□□ -0.81
VPS53-217ENST00000575100 SSUH2Q9Y2M2 353 aa10.01□□□□□ -0.81
VPS53-217ENST00000575100 CDC42BPBQ9Y5S2 1711 aa10□□□□□ -0.81
VPS53-217ENST00000575100 MAP3K1Q13233 1512 aa10□□□□□ -0.81
VPS53-217ENST00000575100 ZNF518AQ6AHZ1 1483 aa9.99□□□□□ -0.81
VPS53-217ENST00000575100 LRRC9Q6ZRR7 1453 aa9.99□□□□□ -0.81
VPS53-217ENST00000575100 SETD1BQ9UPS6 1966 aaKnown RBP9.99□□□□□ -0.81
VPS53-217ENST00000575100 DCAF8Q5TAQ9 597 aa9.99□□□□□ -0.81
VPS53-217ENST00000575100 ARIH1Q9Y4X5 557 aaPredicted RBP9.99□□□□□ -0.81
VPS53-217ENST00000575100 TROQ12816 1431 aaPredicted RBP9.99□□□□□ -0.81
VPS53-217ENST00000575100 DIP2CQ9Y2E4 1556 aa9.99□□□□□ -0.81
VPS53-217ENST00000575100 STRCQ7RTU9 1775 aa9.99□□□□□ -0.81
VPS53-217ENST00000575100 PATL2C9JE40 543 aaKnown RBP9.99□□□□□ -0.81
VPS53-217ENST00000575100 HSPA2P54652 639 aa9.99□□□□□ -0.81
VPS53-217ENST00000575100 EFCAB2Q5VUJ9 269 aa9.99□□□□□ -0.81
VPS53-217ENST00000575100 CCDC125Q86Z20 511 aa9.98□□□□□ -0.81
VPS53-217ENST00000575100 PREX2Q70Z35 1606 aa9.98□□□□□ -0.81
VPS53-217ENST00000575100 PLSCR2Q9NRY7 297 aa9.97□□□□□ -0.81
VPS53-217ENST00000575100 ZBTB12Q9Y330 459 aaPredicted RBP9.97□□□□□ -0.81
VPS53-217ENST00000575100 ABCA6Q8N139 1617 aa9.97□□□□□ -0.81
VPS53-217ENST00000575100 CCDC18Q5T9S5 1454 aa9.97□□□□□ -0.81
VPS53-217ENST00000575100 ITSN2Q9NZM3 1697 aa9.97□□□□□ -0.81
VPS53-217ENST00000575100 ARHGAP5Q13017 1502 aa9.97□□□□□ -0.81
VPS53-217ENST00000575100 DSG3P32926 999 aa9.97□□□□□ -0.81
VPS53-217ENST00000575100 AGLP35573 1532 aa9.96□□□□□ -0.81
VPS53-217ENST00000575100 UBE2Q2Q8WVN8 375 aa9.96□□□□□ -0.81
VPS53-217ENST00000575100 IGSF5Q9NSI5 407 aa9.96□□□□□ -0.81
VPS53-217ENST00000575100 MLH3Q9UHC1 1453 aa9.96□□□□□ -0.81
VPS53-217ENST00000575100 C3P01024 1663 aa9.96□□□□□ -0.81
VPS53-217ENST00000575100 ABCC1P33527 1531 aa9.96□□□□□ -0.82
VPS53-217ENST00000575100 CERKQ8TCT0 537 aa9.95□□□□□ -0.82
VPS53-217ENST00000575100 POLR3GLQ9BT43 218 aa9.95□□□□□ -0.82
VPS53-217ENST00000575100 MLECQ14165 292 aa9.95□□□□□ -0.82
VPS53-217ENST00000575100 CDC42BPAQ5VT25 1732 aa9.94□□□□□ -0.82
VPS53-217ENST00000575100 MTUS2Q5JR59 1369 aa9.94□□□□□ -0.82
VPS53-217ENST00000575100 KIDINS220Q9ULH0 1771 aa9.93□□□□□ -0.82
VPS53-217ENST00000575100 PPP1R15AO75807 674 aaPredicted RBP9.93□□□□□ -0.82
VPS53-217ENST00000575100 POM121Q96HA1 1249 aa9.93□□□□□ -0.82
VPS53-217ENST00000575100 UHRF1BP1Q6BDS2 1440 aa9.92□□□□□ -0.82
VPS53-217ENST00000575100 KCNA1Q09470 495 aa9.92□□□□□ -0.82
VPS53-217ENST00000575100 MROH2AA6NES4 1674 aa9.92□□□□□ -0.82
VPS53-217ENST00000575100 EHBP1L1Q8N3D4 1523 aa9.92□□□□□ -0.82
VPS53-217ENST00000575100 PTPRTO14522 1441 aa9.91□□□□□ -0.82
VPS53-217ENST00000575100 PDE4CQ08493 712 aa9.91□□□□□ -0.82
VPS53-217ENST00000575100 AFAP1Q8N556 730 aa9.91□□□□□ -0.82
VPS53-217ENST00000575100 NCOA2Q15596 1464 aa9.91□□□□□ -0.82
VPS53-217ENST00000575100 PCGF6Q9BYE7 350 aa9.9□□□□□ -0.82
VPS53-217ENST00000575100 TRAPPC8Q9Y2L5 1435 aa9.9□□□□□ -0.82
VPS53-217ENST00000575100 CEBPAP49715 358 aaPredicted RBP9.9□□□□□ -0.83
VPS53-217ENST00000575100 PPM1GO15355 546 aaPredicted RBP9.89□□□□□ -0.83
VPS53-217ENST00000575100 CCDC27Q2M243 656 aa9.89□□□□□ -0.83
VPS53-217ENST00000575100 PARP9Q8IXQ6 854 aa9.89□□□□□ -0.83
VPS53-217ENST00000575100 CNTLNQ9NXG0 1405 aa9.89□□□□□ -0.83
VPS53-217ENST00000575100 SAMD9LQ8IVG5 1584 aa9.89□□□□□ -0.83
VPS53-217ENST00000575100 UNCXA6NJT0 531 aa9.88□□□□□ -0.83
VPS53-217ENST00000575100 BRD1O95696 1058 aa9.88□□□□□ -0.83
VPS53-217ENST00000575100 MLLT3P42568 568 aaPredicted RBP9.88□□□□□ -0.83
VPS53-217ENST00000575100 AMHR2Q16671 573 aa9.88□□□□□ -0.83
VPS53-217ENST00000575100 IQSEC2Q5JU85 1478 aa9.88□□□□□ -0.83
VPS53-217ENST00000575100 SUPT6HQ7KZ85 1726 aaKnown RBP9.88□□□□□ -0.83
VPS53-217ENST00000575100 LTBP4Q8N2S1 1624 aa9.88□□□□□ -0.83
VPS53-217ENST00000575100 SPDYE2BA6NHP3 402 aa9.87□□□□□ -0.83
VPS53-217ENST00000575100 SPDYE6P0CI01 402 aa9.87□□□□□ -0.83
VPS53-217ENST00000575100 SPDYE2Q495Y8 402 aa9.87□□□□□ -0.83
VPS53-217ENST00000575100 FAM212AQ96EL1 285 aa9.87□□□□□ -0.83
VPS53-217ENST00000575100 NPATQ14207 1427 aa9.87□□□□□ -0.83
VPS53-217ENST00000575100 ZNF142P52746 1687 aaPredicted RBP9.86□□□□□ -0.83
VPS53-217ENST00000575100 PLXNC1O60486 1568 aa9.86□□□□□ -0.83
VPS53-217ENST00000575100 INO80Q9ULG1 1556 aaPredicted RBP9.86□□□□□ -0.83
VPS53-217ENST00000575100 NCOA1Q15788 1441 aa9.86□□□□□ -0.83
VPS53-217ENST00000575100 RRBP1Q9P2E9 1410 aaKnown RBP9.85□□□□□ -0.83
VPS53-217ENST00000575100 PCMTD1Q96MG8 357 aaPredicted RBP9.85□□□□□ -0.83
VPS53-217ENST00000575100 GPR37O15354 613 aa9.84□□□□□ -0.83
VPS53-217ENST00000575100 MFRPQ9BY79 579 aa9.84□□□□□ -0.83
VPS53-217ENST00000575100 SYCP2Q9BX26 1530 aa9.84□□□□□ -0.83
VPS53-217ENST00000575100 ATP7AQ04656 1500 aa9.84□□□□□ -0.83
VPS53-217ENST00000575100 GPATCH8Q9UKJ3 1502 aaKnown RBP9.84□□□□□ -0.83
VPS53-217ENST00000575100 CANXP27824 592 aaKnown RBP9.84□□□□□ -0.83
VPS53-217ENST00000575100 CWC22Q9HCG8 908 aaKnown RBP9.84□□□□□ -0.83
VPS53-217ENST00000575100 MYOM3Q5VTT5 1437 aa9.84□□□□□ -0.83
VPS53-217ENST00000575100 CLTCQ00610 1675 aaKnown RBP9.83□□□□□ -0.84
VPS53-217ENST00000575100 PLEKHH2Q8IVE3 1493 aa9.83□□□□□ -0.84
VPS53-217ENST00000575100 MYT1LQ9UL68 1186 aa9.83□□□□□ -0.84
VPS53-217ENST00000575100 MYO3AQ8NEV4 1616 aa9.83□□□□□ -0.84
VPS53-217ENST00000575100 FGD6Q6ZV73 1430 aa9.83□□□□□ -0.84
VPS53-217ENST00000575100 KIAA1107Q9UPP5 1409 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms