RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 TMEM134Q9H6X4 195 aa7.85□□□□□ -1.15
NUP88-209ENST00000574855 MAP2K5Q13163 448 aa7.82□□□□□ -1.16
NUP88-209ENST00000574855 MINK1Q8N4C8 1332 aaPredicted RBP7.81□□□□□ -1.16
NUP88-209ENST00000574855 IRF6O14896 467 aa7.81□□□□□ -1.16
NUP88-209ENST00000574855 RSPH4AQ5TD94 716 aa7.8□□□□□ -1.16
NUP88-209ENST00000574855 ITGBL1O95965 494 aaPredicted RBP7.79□□□□□ -1.16
NUP88-209ENST00000574855 IFFO2Q5TF58 517 aa7.79□□□□□ -1.16
NUP88-209ENST00000574855 BCANQ96GW7 911 aa7.79□□□□□ -1.16
NUP88-209ENST00000574855 PRR14Q9BWN1 585 aa7.79□□□□□ -1.16
NUP88-209ENST00000574855 APLP1P51693 650 aa7.78□□□□□ -1.16
NUP88-209ENST00000574855 KCNC4Q03721 635 aa7.78□□□□□ -1.16
NUP88-209ENST00000574855 KRI1Q8N9T8 703 aaKnown RBP7.78□□□□□ -1.16
NUP88-209ENST00000574855 DAXXQ9UER7 740 aaPredicted RBP7.78□□□□□ -1.16
NUP88-209ENST00000574855 ZC3H15Q8WU90 426 aaKnown RBP7.77□□□□□ -1.17
NUP88-209ENST00000574855 PHOX2BQ99453 314 aa7.77□□□□□ -1.17
NUP88-209ENST00000574855 ZMYND10O75800 440 aa7.76□□□□□ -1.17
NUP88-209ENST00000574855 BARGINQ6ZT62 677 aa7.76□□□□□ -1.17
NUP88-209ENST00000574855 KMT5BQ4FZB7 885 aa7.75□□□□□ -1.17
NUP88-209ENST00000574855 SULF1Q8IWU6 871 aa7.75□□□□□ -1.17
NUP88-209ENST00000574855 SLC10A3P09131 477 aa7.74□□□□□ -1.17
NUP88-209ENST00000574855 TJAP1Q5JTD0 557 aa7.74□□□□□ -1.17
NUP88-209ENST00000574855 NLRP7Q8WX94 980 aa7.74□□□□□ -1.17
NUP88-209ENST00000574855 CCDC102AQ96A19 550 aa7.74□□□□□ -1.17
NUP88-209ENST00000574855 DDX11L8A8MPP1 907 aa7.73□□□□□ -1.17
NUP88-209ENST00000574855 CFHP08603 1231 aa7.73□□□□□ -1.17
NUP88-209ENST00000574855 MTRQ99707 1265 aa7.73□□□□□ -1.17
NUP88-209ENST00000574855 IL21Q9HBE4 155 aa7.73□□□□□ -1.17
NUP88-209ENST00000574855 ACTN4O43707 911 aaKnown RBP7.72□□□□□ -1.17
NUP88-209ENST00000574855 RDH13Q8NBN7 331 aa7.72□□□□□ -1.17
NUP88-209ENST00000574855 PCDHB3Q9Y5E6 796 aa7.72□□□□□ -1.17
NUP88-209ENST00000574855 COPS2P61201 443 aa7.71□□□□□ -1.18
NUP88-209ENST00000574855 MDM2Q00987 491 aaPredicted RBP7.7□□□□□ -1.18
NUP88-209ENST00000574855 A0A0G2JS52 829 aa7.69□□□□□ -1.18
NUP88-209ENST00000574855 CLCN1P35523 988 aa7.69□□□□□ -1.18
NUP88-209ENST00000574855 GCGRP47871 477 aa7.68□□□□□ -1.18
NUP88-209ENST00000574855 BLOC1S3Q6QNY0 202 aa7.68□□□□□ -1.18
NUP88-209ENST00000574855 ZNF516Q92618 1163 aa7.68□□□□□ -1.18
NUP88-209ENST00000574855 GPCPD1Q9NPB8 672 aa7.68□□□□□ -1.18
NUP88-209ENST00000574855 ZPR1O75312 459 aa7.67□□□□□ -1.18
NUP88-209ENST00000574855 NR1I2O75469 434 aa7.66□□□□□ -1.18
NUP88-209ENST00000574855 AK7Q96M32 723 aa7.66□□□□□ -1.18
NUP88-209ENST00000574855 RGS20O76081 388 aa7.65□□□□□ -1.18
NUP88-209ENST00000574855 CD46P15529 392 aa7.65□□□□□ -1.18
NUP88-209ENST00000574855 ATP6V1AP38606 617 aa7.64□□□□□ -1.19
NUP88-209ENST00000574855 FUT2Q10981 343 aa7.64□□□□□ -1.19
NUP88-209ENST00000574855 AMHR2Q16671 573 aa7.64□□□□□ -1.19
NUP88-209ENST00000574855 GRIPAP1Q4V328 841 aa7.64□□□□□ -1.19
NUP88-209ENST00000574855 TMUB1Q9BVT8 246 aa7.64□□□□□ -1.19
NUP88-209ENST00000574855 TTLL12Q14166 644 aaPredicted RBP7.63□□□□□ -1.19
NUP88-209ENST00000574855 PUS10Q3MIT2 529 aaKnown RBP7.63□□□□□ -1.19
NUP88-209ENST00000574855 SCUBE3Q8IX30 993 aa7.63□□□□□ -1.19
NUP88-209ENST00000574855 NKX2-3Q8TAU0 364 aa7.63□□□□□ -1.19
NUP88-209ENST00000574855 FAM217BQ9NTX9 383 aaPredicted RBP7.63□□□□□ -1.19
NUP88-209ENST00000574855 TRIM66O15016 1216 aa7.62□□□□□ -1.19
NUP88-209ENST00000574855 GGCXP38435 758 aa7.62□□□□□ -1.19
NUP88-209ENST00000574855 PPP1R18Q6NYC8 613 aa7.62□□□□□ -1.19
NUP88-209ENST00000574855 KDM4AO75164 1064 aa7.61□□□□□ -1.19
NUP88-209ENST00000574855 SSTR3P32745 418 aaPredicted RBP7.61□□□□□ -1.19
NUP88-209ENST00000574855 MORN1Q5T089 497 aa7.61□□□□□ -1.19
NUP88-209ENST00000574855 REPIN1Q9BWE0 567 aaKnown RBP7.61□□□□□ -1.19
NUP88-209ENST00000574855 SLC24A3Q9HC58 644 aa7.61□□□□□ -1.19
NUP88-209ENST00000574855 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.6□□□□□ -1.19
NUP88-209ENST00000574855 USP46P62068 366 aa7.59□□□□□ -1.19
NUP88-209ENST00000574855 NUTM1Q86Y26 1132 aa7.59□□□□□ -1.19
NUP88-209ENST00000574855 ADH1BP00325 375 aa7.58□□□□□ -1.2
NUP88-209ENST00000574855 GIGYF2Q6Y7W6 1299 aaKnown RBP7.58□□□□□ -1.2
NUP88-209ENST00000574855 SPSB2Q99619 263 aa7.58□□□□□ -1.2
NUP88-209ENST00000574855 SLC27A5Q9Y2P5 690 aa7.58□□□□□ -1.2
NUP88-209ENST00000574855 TLL1O43897 1013 aa7.57□□□□□ -1.2
NUP88-209ENST00000574855 FMNL1O95466 1100 aaPredicted RBP7.57□□□□□ -1.2
NUP88-209ENST00000574855 SALL2Q9Y467 1007 aaPredicted RBP7.57□□□□□ -1.2
NUP88-209ENST00000574855 PDE4DQ08499 809 aa7.56□□□□□ -1.2
NUP88-209ENST00000574855 Q3C1V9 767 aa7.56□□□□□ -1.2
NUP88-209ENST00000574855 PARP9Q8IXQ6 854 aa7.56□□□□□ -1.2
NUP88-209ENST00000574855 SLC6A16Q9GZN6 736 aa7.55□□□□□ -1.2
NUP88-209ENST00000574855 HOXA2O43364 376 aa7.54□□□□□ -1.2
NUP88-209ENST00000574855 S1PR4O95977 384 aa7.54□□□□□ -1.2
NUP88-209ENST00000574855 BRICD5Q6PL45 260 aa7.54□□□□□ -1.2
NUP88-209ENST00000574855 THAP11Q96EK4 314 aa7.54□□□□□ -1.2
NUP88-209ENST00000574855 RNF223E7ERA6 249 aa7.53□□□□□ -1.2
NUP88-209ENST00000574855 BEGAINQ9BUH8 593 aa7.53□□□□□ -1.2
NUP88-209ENST00000574855 DIXDC1Q155Q3 683 aa7.52□□□□□ -1.21
NUP88-209ENST00000574855 ANKLE1Q8NAG6 615 aa7.52□□□□□ -1.21
NUP88-209ENST00000574855 SPIRE2Q8WWL2 714 aa7.52□□□□□ -1.21
NUP88-209ENST00000574855 PRKD2Q9BZL6 878 aa7.52□□□□□ -1.21
NUP88-209ENST00000574855 MS4A1P11836 297 aa7.51□□□□□ -1.21
NUP88-209ENST00000574855 FAM160A2Q8N612 972 aaPredicted RBP7.51□□□□□ -1.21
NUP88-209ENST00000574855 V9GY48 417 aaPredicted RBP7.51□□□□□ -1.21
NUP88-209ENST00000574855 PPEF1O14829 653 aaPredicted RBP7.5□□□□□ -1.21
NUP88-209ENST00000574855 RNF19BQ6ZMZ0 732 aa7.5□□□□□ -1.21
NUP88-209ENST00000574855 HLA-CQ95604 372 aa7.5□□□□□ -1.21
NUP88-209ENST00000574855 USB1Q9BQ65 265 aaKnown RBP7.5□□□□□ -1.21
NUP88-209ENST00000574855 FDX1P10109 184 aa7.49□□□□□ -1.21
NUP88-209ENST00000574855 MSS51Q4VC12 460 aa7.49□□□□□ -1.21
NUP88-209ENST00000574855 SLC19A1P41440 591 aa7.48□□□□□ -1.21
NUP88-209ENST00000574855 GUCA2AQ02747 115 aa7.48□□□□□ -1.21
NUP88-209ENST00000574855 TBC1D2Q9BYX2 928 aa7.48□□□□□ -1.21
NUP88-209ENST00000574855 MOXD2PA6NHM9 499 aa7.47□□□□□ -1.21
NUP88-209ENST00000574855 NDUFV2P19404 249 aa7.47□□□□□ -1.21
NUP88-209ENST00000574855 IRX2Q9BZI1 471 aaPredicted RBP7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms