RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.12■□□□□ 0.01
CIITA-208ENST00000572665 ZC3H15Q8WU90 426 aaKnown RBP15.12■□□□□ 0.01
CIITA-208ENST00000572665 AKNAQ7Z591 1439 aa15.11■□□□□ 0.01
CIITA-208ENST00000572665 ARID4BQ4LE39 1312 aaPredicted RBP15.11■□□□□ 0.01
CIITA-208ENST00000572665 RICTORQ6R327 1708 aa15.1■□□□□ 0.01
CIITA-208ENST00000572665 ATP1B4Q9UN42 357 aaPredicted RBP15.1■□□□□ 0.01
CIITA-208ENST00000572665 FRMPD1Q5SYB0 1578 aa15.1■□□□□ 0.01
CIITA-208ENST00000572665 ADAMTSL3P82987 1691 aa15.09■□□□□ 0.01
CIITA-208ENST00000572665 TTC37Q6PGP7 1564 aa15.08■□□□□ 0
CIITA-208ENST00000572665 BCORL1Q5H9F3 1711 aa15.08■□□□□ 0
CIITA-208ENST00000572665 CDK13Q14004 1512 aaKnown RBP15.07■□□□□ 0
CIITA-208ENST00000572665 ARHGEF40Q8TER5 1519 aa15.07■□□□□ 0
CIITA-208ENST00000572665 PTCD2Q8WV60 388 aaKnown RBP15.07■□□□□ 0
CIITA-208ENST00000572665 POGZQ7Z3K3 1410 aa15.07■□□□□ 0
CIITA-208ENST00000572665 ARHGAP35Q9NRY4 1499 aa15.07■□□□□ 0
CIITA-208ENST00000572665 MYO5CQ9NQX4 1742 aa15.06■□□□□ 0
CIITA-208ENST00000572665 SLC34A2O95436 690 aa15.06■□□□□ 0
CIITA-208ENST00000572665 RBM26Q5T8P6 1007 aaKnown RBP15.06■□□□□ 0
CIITA-208ENST00000572665 MAGI2Q86UL8 1455 aa15.06■□□□□ 0
CIITA-208ENST00000572665 POTEJP0CG39 1038 aa15.05■□□□□ -0
CIITA-208ENST00000572665 PLCH2O75038 1416 aa15.05■□□□□ -0
CIITA-208ENST00000572665 CLIP1P30622 1438 aa15.05■□□□□ -0
CIITA-208ENST00000572665 PTPRMP28827 1452 aa15.05■□□□□ -0
CIITA-208ENST00000572665 ZMYM4Q5VZL5 1548 aa15.05■□□□□ -0
CIITA-208ENST00000572665 KIF14Q15058 1648 aa15.04■□□□□ -0
CIITA-208ENST00000572665 TBC1D12O60347 775 aa15.04■□□□□ -0
CIITA-208ENST00000572665 ZFYVE16Q7Z3T8 1539 aa15.03■□□□□ -0
CIITA-208ENST00000572665 POTEB2H3BUK9 544 aa15.03■□□□□ -0
CIITA-208ENST00000572665 EVI5O60447 810 aa15.02■□□□□ -0
CIITA-208ENST00000572665 EFCAB2Q5VUJ9 269 aa15.02■□□□□ -0
CIITA-208ENST00000572665 MADDQ8WXG6 1647 aa15.02□□□□□ -0.01
CIITA-208ENST00000572665 PTGER2P43116 358 aa15.01□□□□□ -0.01
CIITA-208ENST00000572665 GPIHBP1Q8IV16 184 aa15.01□□□□□ -0.01
CIITA-208ENST00000572665 SCAPERQ9BY12 1400 aa15□□□□□ -0.01
CIITA-208ENST00000572665 GRXCR2A6NFK2 248 aa15□□□□□ -0.01
CIITA-208ENST00000572665 TROQ12816 1431 aaPredicted RBP15□□□□□ -0.01
CIITA-208ENST00000572665 ZMYND10O75800 440 aa14.99□□□□□ -0.01
CIITA-208ENST00000572665 CCDC18Q5T9S5 1454 aa14.99□□□□□ -0.01
CIITA-208ENST00000572665 RIMS1Q86UR5 1692 aaKnown RBP14.99□□□□□ -0.01
CIITA-208ENST00000572665 ARHGAP5Q13017 1502 aa14.97□□□□□ -0.01
CIITA-208ENST00000572665 ZNF518AQ6AHZ1 1483 aa14.96□□□□□ -0.01
CIITA-208ENST00000572665 ZNF316A6NFI3 1004 aaPredicted RBP14.96□□□□□ -0.01
CIITA-208ENST00000572665 DDX12PQ92771 950 aa14.96□□□□□ -0.01
CIITA-208ENST00000572665 CASKIN1Q8WXD9 1431 aa14.95□□□□□ -0.02
CIITA-208ENST00000572665 LRRIQ1Q96JM4 1722 aa14.95□□□□□ -0.02
CIITA-208ENST00000572665 PCF11O94913 1555 aaKnown RBP14.94□□□□□ -0.02
CIITA-208ENST00000572665 C9orf84Q5VXU9 1444 aa14.94□□□□□ -0.02
CIITA-208ENST00000572665 YEATS2Q9ULM3 1422 aa14.94□□□□□ -0.02
CIITA-208ENST00000572665 FER1L4A9Z1Z3 1794 aa14.94□□□□□ -0.02
CIITA-208ENST00000572665 ANO8Q9HCE9 1232 aaPredicted RBP14.94□□□□□ -0.02
CIITA-208ENST00000572665 ATP10AO60312 1499 aa14.94□□□□□ -0.02
CIITA-208ENST00000572665 OSBPP22059 807 aa14.93□□□□□ -0.02
CIITA-208ENST00000572665 BARGINQ6ZT62 677 aa14.93□□□□□ -0.02
CIITA-208ENST00000572665 MYT1LQ9UL68 1186 aa14.93□□□□□ -0.02
CIITA-208ENST00000572665 PCDHGA4Q9Y5G9 962 aa14.93□□□□□ -0.02
CIITA-208ENST00000572665 FYCO1Q9BQS8 1478 aa14.91□□□□□ -0.02
CIITA-208ENST00000572665 SLC24A3Q9HC58 644 aa14.91□□□□□ -0.02
CIITA-208ENST00000572665 SCUBE2Q9NQ36 999 aa14.91□□□□□ -0.02
CIITA-208ENST00000572665 CDC42BPBQ9Y5S2 1711 aa14.91□□□□□ -0.02
CIITA-208ENST00000572665 MAMSTRQ6ZN01 415 aa14.9□□□□□ -0.02
CIITA-208ENST00000572665 SLAIN1Q8ND83 568 aa14.9□□□□□ -0.02
CIITA-208ENST00000572665 PREX2Q70Z35 1606 aa14.9□□□□□ -0.02
CIITA-208ENST00000572665 KDM5CP41229 1560 aa14.9□□□□□ -0.02
CIITA-208ENST00000572665 GPR37O15354 613 aa14.89□□□□□ -0.03
CIITA-208ENST00000572665 MLECQ14165 292 aa14.89□□□□□ -0.03
CIITA-208ENST00000572665 LMTK3Q96Q04 1460 aa14.89□□□□□ -0.03
CIITA-208ENST00000572665 SIGLEC1Q9BZZ2 1709 aa14.87□□□□□ -0.03
CIITA-208ENST00000572665 ARHGEF12Q9NZN5 1544 aa14.87□□□□□ -0.03
CIITA-208ENST00000572665 HOXB3P14651 431 aaPredicted RBP14.86□□□□□ -0.03
CIITA-208ENST00000572665 PRIM1P49642 420 aaKnown RBP14.86□□□□□ -0.03
CIITA-208ENST00000572665 REREQ9P2R6 1566 aa14.85□□□□□ -0.03
CIITA-208ENST00000572665 ITSN2Q9NZM3 1697 aa14.85□□□□□ -0.03
CIITA-208ENST00000572665 MLH3Q9UHC1 1453 aa14.85□□□□□ -0.03
CIITA-208ENST00000572665 NUTM2FA1L443 756 aa14.85□□□□□ -0.03
CIITA-208ENST00000572665 DOK7Q18PE1 504 aa14.85□□□□□ -0.03
CIITA-208ENST00000572665 AFAP1Q8N556 730 aa14.85□□□□□ -0.03
CIITA-208ENST00000572665 CDC42BPAQ5VT25 1732 aa14.85□□□□□ -0.03
CIITA-208ENST00000572665 ABCC1P33527 1531 aa14.85□□□□□ -0.03
CIITA-208ENST00000572665 ESF1Q9H501 851 aaKnown RBP14.84□□□□□ -0.03
CIITA-208ENST00000572665 DIP2CQ9Y2E4 1556 aa14.83□□□□□ -0.04
CIITA-208ENST00000572665 FBXO41Q8TF61 875 aa14.83□□□□□ -0.04
CIITA-208ENST00000572665 PREX1Q8TCU6 1659 aa14.83□□□□□ -0.04
CIITA-208ENST00000572665 PHF14O94880 888 aa14.82□□□□□ -0.04
CIITA-208ENST00000572665 SETD1BQ9UPS6 1966 aaKnown RBP14.81□□□□□ -0.04
CIITA-208ENST00000572665 EPAS1Q99814 870 aa14.8□□□□□ -0.04
CIITA-208ENST00000572665 AGLP35573 1532 aa14.8□□□□□ -0.04
CIITA-208ENST00000572665 ABCA6Q8N139 1617 aa14.8□□□□□ -0.04
CIITA-208ENST00000572665 PLEKHH2Q8IVE3 1493 aa14.79□□□□□ -0.04
CIITA-208ENST00000572665 KRI1Q8N9T8 703 aaKnown RBP14.79□□□□□ -0.04
CIITA-208ENST00000572665 TRAPPC8Q9Y2L5 1435 aa14.78□□□□□ -0.04
CIITA-208ENST00000572665 RIMBP2O15034 1052 aa14.78□□□□□ -0.04
CIITA-208ENST00000572665 BRPF1P55201 1214 aaPredicted RBP14.78□□□□□ -0.04
CIITA-208ENST00000572665 ZSWIM6Q9HCJ5 1215 aa14.78□□□□□ -0.04
CIITA-208ENST00000572665 ZNF777Q9ULD5 760 aaPredicted RBP14.78□□□□□ -0.04
CIITA-208ENST00000572665 PCDHGA10Q9Y5H3 936 aa14.78□□□□□ -0.04
CIITA-208ENST00000572665 MTUS2Q5JR59 1369 aa14.77□□□□□ -0.04
CIITA-208ENST00000572665 CCNB3Q8WWL7 1395 aa14.77□□□□□ -0.04
CIITA-208ENST00000572665 HSPA2P54652 639 aa14.77□□□□□ -0.05
CIITA-208ENST00000572665 EN1Q05925 392 aaPredicted RBP14.77□□□□□ -0.05
CIITA-208ENST00000572665 AK7Q96M32 723 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms