RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CPS1P31327 1500 aa12.4□□□□□ -0.42
VPS53-214ENST00000572607 PPARGC1BQ86YN6 1023 aaKnown RBP12.39□□□□□ -0.43
VPS53-214ENST00000572607 RNF17Q9BXT8 1623 aaKnown RBP12.39□□□□□ -0.43
VPS53-214ENST00000572607 PZPP20742 1482 aa12.39□□□□□ -0.43
VPS53-214ENST00000572607 KANK1Q14678 1352 aa12.38□□□□□ -0.43
VPS53-214ENST00000572607 DEPDC5O75140 1603 aa12.37□□□□□ -0.43
VPS53-214ENST00000572607 FBXO31Q5XUX0 539 aaPredicted RBP12.37□□□□□ -0.43
VPS53-214ENST00000572607 TNRQ92752 1358 aa12.37□□□□□ -0.43
VPS53-214ENST00000572607 ZC3H13Q5T200 1668 aaKnown RBP12.37□□□□□ -0.43
VPS53-214ENST00000572607 ABCC3O15438 1527 aa12.37□□□□□ -0.43
VPS53-214ENST00000572607 MED14O60244 1454 aa12.36□□□□□ -0.43
VPS53-214ENST00000572607 ADGRL2O95490 1459 aa12.36□□□□□ -0.43
VPS53-214ENST00000572607 IQGAP1P46940 1657 aa12.35□□□□□ -0.43
VPS53-214ENST00000572607 PRDM15P57071 1507 aaPredicted RBP12.34□□□□□ -0.43
VPS53-214ENST00000572607 ITGAEP38570 1179 aa12.34□□□□□ -0.43
VPS53-214ENST00000572607 XIRP1Q702N8 1843 aaKnown RBP12.34□□□□□ -0.43
VPS53-214ENST00000572607 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS53-214ENST00000572607 ANKRD50Q9ULJ7 1429 aa12.33□□□□□ -0.44
VPS53-214ENST00000572607 MROH1Q8NDA8 1641 aa12.33□□□□□ -0.44
VPS53-214ENST00000572607 NLRP1Q9C000 1473 aa12.32□□□□□ -0.44
VPS53-214ENST00000572607 ROCK1Q13464 1354 aa12.31□□□□□ -0.44
VPS53-214ENST00000572607 PIP4K2BP78356 416 aa12.31□□□□□ -0.44
VPS53-214ENST00000572607 LRRC7Q96NW7 1537 aa12.31□□□□□ -0.44
VPS53-214ENST00000572607 UGGT1Q9NYU2 1555 aa12.3□□□□□ -0.44
VPS53-214ENST00000572607 NPHP4O75161 1426 aaPredicted RBP12.3□□□□□ -0.44
VPS53-214ENST00000572607 ERVK-7P63135 1459 aa12.3□□□□□ -0.44
VPS53-214ENST00000572607 SYNMO15061 1565 aa12.3□□□□□ -0.44
VPS53-214ENST00000572607 ARHGAP31Q2M1Z3 1444 aa12.29□□□□□ -0.44
VPS53-214ENST00000572607 UBR1Q8IWV7 1749 aa12.29□□□□□ -0.44
VPS53-214ENST00000572607 GABBR2O75899 941 aa12.29□□□□□ -0.44
VPS53-214ENST00000572607 THEMISQ8N1K5 641 aaPredicted RBP12.29□□□□□ -0.44
VPS53-214ENST00000572607 CEP152O94986 1710 aa12.28□□□□□ -0.44
VPS53-214ENST00000572607 TOM1O60784 492 aa12.28□□□□□ -0.44
VPS53-214ENST00000572607 RRBP1Q9P2E9 1410 aaKnown RBP12.28□□□□□ -0.44
VPS53-214ENST00000572607 LMTK2Q8IWU2 1503 aa12.27□□□□□ -0.44
VPS53-214ENST00000572607 FARP1Q9Y4F1 1045 aaPredicted RBP12.27□□□□□ -0.45
VPS53-214ENST00000572607 CFAP65Q6ZU64 1925 aaKnown RBP12.27□□□□□ -0.45
VPS53-214ENST00000572607 ANKLE2Q86XL3 938 aa12.26□□□□□ -0.45
VPS53-214ENST00000572607 RGS17Q9UGC6 210 aaPredicted RBP12.26□□□□□ -0.45
VPS53-214ENST00000572607 STAG3Q9UJ98 1225 aa12.25□□□□□ -0.45
VPS53-214ENST00000572607 EFCAB6Q5THR3 1501 aa12.23□□□□□ -0.45
VPS53-214ENST00000572607 ARHGAP23Q9P227 1491 aa12.23□□□□□ -0.45
VPS53-214ENST00000572607 SPDYE4A6NLX3 237 aa12.22□□□□□ -0.45
VPS53-214ENST00000572607 UNC13BO14795 1591 aa12.22□□□□□ -0.45
VPS53-214ENST00000572607 RPRD2Q5VT52 1461 aaKnown RBP12.21□□□□□ -0.45
VPS53-214ENST00000572607 NUP155O75694 1391 aa12.21□□□□□ -0.45
VPS53-214ENST00000572607 SLIT1O75093 1534 aa12.21□□□□□ -0.46
VPS53-214ENST00000572607 CD44P16070 742 aaKnown RBP12.2□□□□□ -0.46
VPS53-214ENST00000572607 SLC52A1Q9NWF4 448 aa12.2□□□□□ -0.46
VPS53-214ENST00000572607 EID1Q9Y6B2 187 aa12.2□□□□□ -0.46
VPS53-214ENST00000572607 SCAF11Q99590 1463 aaKnown RBP12.19□□□□□ -0.46
VPS53-214ENST00000572607 TET3O43151 1660 aa12.19□□□□□ -0.46
VPS53-214ENST00000572607 NOS1P29475 1434 aa12.19□□□□□ -0.46
VPS53-214ENST00000572607 LTKP29376 864 aa12.18□□□□□ -0.46
VPS53-214ENST00000572607 PIK3C2BO00750 1634 aa12.18□□□□□ -0.46
VPS53-214ENST00000572607 IDI1Q13907 227 aa12.17□□□□□ -0.46
VPS53-214ENST00000572607 TXNDC2Q86VQ3 553 aa12.17□□□□□ -0.46
VPS53-214ENST00000572607 IQGAP3Q86VI3 1631 aa12.16□□□□□ -0.46
VPS53-214ENST00000572607 NAIPQ13075 1403 aa12.16□□□□□ -0.46
VPS53-214ENST00000572607 GCC2Q8IWJ2 1684 aa12.16□□□□□ -0.46
VPS53-214ENST00000572607 HFM1A2PYH4 1435 aa12.15□□□□□ -0.46
VPS53-214ENST00000572607 CREBZFQ9NS37 354 aa12.15□□□□□ -0.46
VPS53-214ENST00000572607 TMEM2Q9UHN6 1383 aa12.15□□□□□ -0.46
VPS53-214ENST00000572607 SETD1AO15047 1707 aaKnown RBP12.14□□□□□ -0.47
VPS53-214ENST00000572607 KDM5AP29375 1690 aaKnown RBP12.14□□□□□ -0.47
VPS53-214ENST00000572607 ROBO1Q9Y6N7 1651 aa12.14□□□□□ -0.47
VPS53-214ENST00000572607 CHGAP10645 457 aaKnown RBP12.14□□□□□ -0.47
VPS53-214ENST00000572607 ADGRB3O60242 1522 aa12.14□□□□□ -0.47
VPS53-214ENST00000572607 CLCN6P51797 869 aa12.13□□□□□ -0.47
VPS53-214ENST00000572607 HDGFP51858 240 aaKnown RBP12.13□□□□□ -0.47
VPS53-214ENST00000572607 TRIM52Q96A61 297 aa12.13□□□□□ -0.47
VPS53-214ENST00000572607 FAM135BQ49AJ0 1406 aa12.12□□□□□ -0.47
VPS53-214ENST00000572607 PPP1R15AO75807 674 aaPredicted RBP12.12□□□□□ -0.47
VPS53-214ENST00000572607 POTEAQ6S8J7 498 aa12.12□□□□□ -0.47
VPS53-214ENST00000572607 BCANQ96GW7 911 aa12.12□□□□□ -0.47
VPS53-214ENST00000572607 NWD1Q149M9 1564 aa12.12□□□□□ -0.47
VPS53-214ENST00000572607 E9PCH4 1651 aa12.11□□□□□ -0.47
VPS53-214ENST00000572607 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.09□□□□□ -0.47
VPS53-214ENST00000572607 MYO5BQ9ULV0 1848 aa12.09□□□□□ -0.47
VPS53-214ENST00000572607 TMEM94Q12767 1356 aa12.08□□□□□ -0.48
VPS53-214ENST00000572607 RIMS2Q9UQ26 1411 aa12.08□□□□□ -0.48
VPS53-214ENST00000572607 ACIN1Q9UKV3 1341 aaKnown RBP12.08□□□□□ -0.48
VPS53-214ENST00000572607 CHD2O14647 1828 aaKnown RBP12.07□□□□□ -0.48
VPS53-214ENST00000572607 COL16A1Q07092 1604 aaPredicted RBP12.06□□□□□ -0.48
VPS53-214ENST00000572607 PHLPP1O60346 1717 aa12.06□□□□□ -0.48
VPS53-214ENST00000572607 TMEM131LA2VDJ0 1609 aa12.05□□□□□ -0.48
VPS53-214ENST00000572607 ZNF326Q5BKZ1 582 aaKnown RBP12.05□□□□□ -0.48
VPS53-214ENST00000572607 SLC26A8Q96RN1 970 aa12.05□□□□□ -0.48
VPS53-214ENST00000572607 PLEKHG1Q9ULL1 1385 aa12.05□□□□□ -0.48
VPS53-214ENST00000572607 ZFYVE9O95405 1425 aa12.04□□□□□ -0.48
VPS53-214ENST00000572607 NKTRP30414 1462 aaKnown RBP12.04□□□□□ -0.48
VPS53-214ENST00000572607 RBM33Q96EV2 1170 aaKnown RBP12.04□□□□□ -0.48
VPS53-214ENST00000572607 SPHKAPQ2M3C7 1700 aa12.03□□□□□ -0.48
VPS53-214ENST00000572607 TRPM2O94759 1503 aa12.03□□□□□ -0.48
VPS53-214ENST00000572607 LRP6O75581 1613 aa12.03□□□□□ -0.48
VPS53-214ENST00000572607 SETD5Q9C0A6 1442 aa12.03□□□□□ -0.48
VPS53-214ENST00000572607 POTEIP0CG38 1075 aa12.02□□□□□ -0.49
VPS53-214ENST00000572607 KCNA6P17658 529 aa12.02□□□□□ -0.49
VPS53-214ENST00000572607 LHX8Q68G74 356 aa12.02□□□□□ -0.49
VPS53-214ENST00000572607 ZNF579Q8NAF0 562 aaKnown RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms