RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 FOXD1Q16676 465 aa20.93■□□□□ 0.94
CCDC40-208ENST00000572270 C14orf37Q86TY3 774 aa20.93■□□□□ 0.94
CCDC40-208ENST00000572270 NUTM2AQ8IVF1 878 aaPredicted RBP20.93■□□□□ 0.94
CCDC40-208ENST00000572270 AFF2P51816 1311 aa20.93■□□□□ 0.94
CCDC40-208ENST00000572270 ADGRB3O60242 1522 aa20.93■□□□□ 0.94
CCDC40-208ENST00000572270 IDI1Q13907 227 aa20.92■□□□□ 0.94
CCDC40-208ENST00000572270 KANK1Q14678 1352 aa20.91■□□□□ 0.94
CCDC40-208ENST00000572270 NCOA3Q9Y6Q9 1424 aa20.91■□□□□ 0.94
CCDC40-208ENST00000572270 RGS12O14924 1447 aa20.9■□□□□ 0.94
CCDC40-208ENST00000572270 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.9■□□□□ 0.94
CCDC40-208ENST00000572270 ERBINQ96RT1 1412 aa20.89■□□□□ 0.94
CCDC40-208ENST00000572270 NUTM2DQ5VT03 806 aaPredicted RBP20.89■□□□□ 0.93
CCDC40-208ENST00000572270 CADPS2Q86UW7 1296 aa20.89■□□□□ 0.93
CCDC40-208ENST00000572270 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.87■□□□□ 0.93
CCDC40-208ENST00000572270 KIF15Q9NS87 1388 aa20.87■□□□□ 0.93
CCDC40-208ENST00000572270 ATF3P18847 181 aa20.87■□□□□ 0.93
CCDC40-208ENST00000572270 DIP2AQ14689 1571 aa20.87■□□□□ 0.93
CCDC40-208ENST00000572270 RBM6P78332 1123 aaKnown RBP20.86■□□□□ 0.93
CCDC40-208ENST00000572270 ZRANB1Q9UGI0 708 aa20.86■□□□□ 0.93
CCDC40-208ENST00000572270 PLEKHG1Q9ULL1 1385 aa20.85■□□□□ 0.93
CCDC40-208ENST00000572270 PPP1R15AO75807 674 aaPredicted RBP20.84■□□□□ 0.93
CCDC40-208ENST00000572270 ATAD2Q6PL18 1390 aa20.84■□□□□ 0.93
CCDC40-208ENST00000572270 QTRT2Q9H974 415 aaKnown RBP20.83■□□□□ 0.93
CCDC40-208ENST00000572270 MYOM3Q5VTT5 1437 aa20.83■□□□□ 0.93
CCDC40-208ENST00000572270 LMTK2Q8IWU2 1503 aa20.83■□□□□ 0.92
CCDC40-208ENST00000572270 C19orf44Q9H6X5 657 aa20.82■□□□□ 0.92
CCDC40-208ENST00000572270 HDGFP51858 240 aaKnown RBP20.81■□□□□ 0.92
CCDC40-208ENST00000572270 C8orf37Q96NL8 207 aa20.81■□□□□ 0.92
CCDC40-208ENST00000572270 SLC52A1Q9NWF4 448 aa20.81■□□□□ 0.92
CCDC40-208ENST00000572270 NOS1P29475 1434 aa20.8■□□□□ 0.92
CCDC40-208ENST00000572270 RRP7BPQ9NSQ0 103 aa20.8■□□□□ 0.92
CCDC40-208ENST00000572270 CROCC2H7BZ55 1655 aa20.8■□□□□ 0.92
CCDC40-208ENST00000572270 BRINP3Q76B58 766 aa20.79■□□□□ 0.92
CCDC40-208ENST00000572270 ZFYVE9O95405 1425 aa20.78■□□□□ 0.92
CCDC40-208ENST00000572270 NGLY1Q96IV0 654 aa20.78■□□□□ 0.92
CCDC40-208ENST00000572270 SETD5Q9C0A6 1442 aa20.78■□□□□ 0.92
CCDC40-208ENST00000572270 MYO5BQ9ULV0 1848 aa20.77■□□□□ 0.92
CCDC40-208ENST00000572270 TBX22Q9Y458 520 aa20.77■□□□□ 0.92
CCDC40-208ENST00000572270 RIMS2Q9UQ26 1411 aa20.77■□□□□ 0.91
CCDC40-208ENST00000572270 SETBP1Q9Y6X0 1596 aa20.76■□□□□ 0.91
CCDC40-208ENST00000572270 ASXL1Q8IXJ9 1541 aa20.76■□□□□ 0.91
CCDC40-208ENST00000572270 GCC2Q8IWJ2 1684 aa20.76■□□□□ 0.91
CCDC40-208ENST00000572270 NHSL1Q5SYE7 1610 aa20.75■□□□□ 0.91
CCDC40-208ENST00000572270 LRRC59Q96AG4 307 aaKnown RBP20.74■□□□□ 0.91
CCDC40-208ENST00000572270 DCCP43146 1447 aa20.72■□□□□ 0.91
CCDC40-208ENST00000572270 PIK3R4Q99570 1358 aa20.72■□□□□ 0.91
CCDC40-208ENST00000572270 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.7■□□□□ 0.9
CCDC40-208ENST00000572270 TMEM131LA2VDJ0 1609 aa20.69■□□□□ 0.9
CCDC40-208ENST00000572270 ABCC5O15440 1437 aa20.69■□□□□ 0.9
CCDC40-208ENST00000572270 RPRD2Q5VT52 1461 aaKnown RBP20.69■□□□□ 0.9
CCDC40-208ENST00000572270 PNPLA6Q8IY17 1366 aa20.68■□□□□ 0.9
CCDC40-208ENST00000572270 ADAMTS13Q76LX8 1427 aa20.68■□□□□ 0.9
CCDC40-208ENST00000572270 TRPM2O94759 1503 aa20.68■□□□□ 0.9
CCDC40-208ENST00000572270 EP400Q96L91 3159 aa20.67■□□□□ 0.9
CCDC40-208ENST00000572270 ADAMTS2O95450 1211 aa20.66■□□□□ 0.9
CCDC40-208ENST00000572270 CCDC125Q86Z20 511 aa20.66■□□□□ 0.9
CCDC40-208ENST00000572270 MST1RQ04912 1400 aa20.65■□□□□ 0.9
CCDC40-208ENST00000572270 DAPK1P53355 1430 aa20.64■□□□□ 0.89
CCDC40-208ENST00000572270 ANKRD30AQ9BXX3 1397 aa20.64■□□□□ 0.89
CCDC40-208ENST00000572270 CHGAP10645 457 aaKnown RBP20.64■□□□□ 0.89
CCDC40-208ENST00000572270 USP21Q9UK80 565 aa20.64■□□□□ 0.89
CCDC40-208ENST00000572270 TRPC5Q9UL62 973 aaPredicted RBP20.64■□□□□ 0.89
CCDC40-208ENST00000572270 AMOTL2Q9Y2J4 779 aa20.64■□□□□ 0.89
CCDC40-208ENST00000572270 PTPN23Q9H3S7 1636 aa20.63■□□□□ 0.89
CCDC40-208ENST00000572270 DDX17Q92841 729 aaKnown RBP20.59■□□□□ 0.89
CCDC40-208ENST00000572270 PTPRUQ92729 1446 aa20.59■□□□□ 0.89
CCDC40-208ENST00000572270 CHIC2Q9UKJ5 165 aa20.58■□□□□ 0.89
CCDC40-208ENST00000572270 KANK4Q5T7N3 995 aaPredicted RBP20.57■□□□□ 0.88
CCDC40-208ENST00000572270 XRN1Q8IZH2 1706 aaKnown RBP20.57■□□□□ 0.88
CCDC40-208ENST00000572270 ATRNO75882 1429 aa20.56■□□□□ 0.88
CCDC40-208ENST00000572270 LRP5O75197 1615 aa20.56■□□□□ 0.88
CCDC40-208ENST00000572270 UNC13BO14795 1591 aa20.55■□□□□ 0.88
CCDC40-208ENST00000572270 PTCH1Q13635 1447 aa20.55■□□□□ 0.88
CCDC40-208ENST00000572270 VPS8Q8N3P4 1428 aa20.55■□□□□ 0.88
CCDC40-208ENST00000572270 FNBP4Q8N3X1 1017 aaPredicted RBP20.53■□□□□ 0.88
CCDC40-208ENST00000572270 ADGRL3Q9HAR2 1447 aa20.52■□□□□ 0.87
CCDC40-208ENST00000572270 BLMP54132 1417 aaPredicted RBP20.5■□□□□ 0.87
CCDC40-208ENST00000572270 NALCNQ8IZF0 1738 aa20.5■□□□□ 0.87
CCDC40-208ENST00000572270 LAMC1P11047 1609 aa20.49■□□□□ 0.87
CCDC40-208ENST00000572270 SF3B2Q13435 895 aaKnown RBP20.47■□□□□ 0.87
CCDC40-208ENST00000572270 C1orf167Q5SNV9 1468 aa20.47■□□□□ 0.87
CCDC40-208ENST00000572270 COL22A1Q8NFW1 1626 aaPredicted RBP20.46■□□□□ 0.87
CCDC40-208ENST00000572270 NRXN3Q9Y4C0 1643 aa20.46■□□□□ 0.87
CCDC40-208ENST00000572270 ANKRD50Q9ULJ7 1429 aa20.46■□□□□ 0.87
CCDC40-208ENST00000572270 ADGRL2O95490 1459 aa20.46■□□□□ 0.87
CCDC40-208ENST00000572270 SOS2Q07890 1332 aaPredicted RBP20.45■□□□□ 0.86
CCDC40-208ENST00000572270 E9PCH4 1651 aa20.45■□□□□ 0.86
CCDC40-208ENST00000572270 MARF1Q9Y4F3 1742 aaKnown RBP20.44■□□□□ 0.86
CCDC40-208ENST00000572270 GJD4Q96KN9 370 aaPredicted RBP20.43■□□□□ 0.86
CCDC40-208ENST00000572270 BCL9LQ86UU0 1499 aa20.43■□□□□ 0.86
CCDC40-208ENST00000572270 DEFB132Q7Z7B7 95 aa20.42■□□□□ 0.86
CCDC40-208ENST00000572270 IQGAP3Q86VI3 1631 aa20.41■□□□□ 0.86
CCDC40-208ENST00000572270 METP08581 1390 aa20.4■□□□□ 0.86
CCDC40-208ENST00000572270 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.39■□□□□ 0.86
CCDC40-208ENST00000572270 MYOM2P54296 1465 aa20.39■□□□□ 0.85
CCDC40-208ENST00000572270 SPHKAPQ2M3C7 1700 aa20.39■□□□□ 0.85
CCDC40-208ENST00000572270 ORAI2Q96SN7 254 aa20.37■□□□□ 0.85
CCDC40-208ENST00000572270 BRWD3Q6RI45 1802 aa20.35■□□□□ 0.85
CCDC40-208ENST00000572270 GLI3P10071 1580 aa20.34■□□□□ 0.85
CCDC40-208ENST00000572270 PSDA5PKW4 1024 aaPredicted RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms