RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 SCAF11Q99590 1463 aaKnown RBP13.99□□□□□ -0.17
CCDC40-207ENST00000572253 RNF17Q9BXT8 1623 aaKnown RBP13.98□□□□□ -0.17
CCDC40-207ENST00000572253 PIK3C2GO75747 1445 aa13.98□□□□□ -0.17
CCDC40-207ENST00000572253 SKAP1Q86WV1 359 aa13.98□□□□□ -0.17
CCDC40-207ENST00000572253 ASXL1Q8IXJ9 1541 aa13.98□□□□□ -0.17
CCDC40-207ENST00000572253 SLFN5Q08AF3 891 aa13.98□□□□□ -0.17
CCDC40-207ENST00000572253 NGEFQ8N5V2 710 aa13.97□□□□□ -0.17
CCDC40-207ENST00000572253 NPC1L1Q9UHC9 1359 aa13.97□□□□□ -0.17
CCDC40-207ENST00000572253 ZNF521Q96K83 1311 aa13.96□□□□□ -0.17
CCDC40-207ENST00000572253 SYNMO15061 1565 aa13.96□□□□□ -0.17
CCDC40-207ENST00000572253 SPAG9O60271 1321 aaKnown RBP13.96□□□□□ -0.18
CCDC40-207ENST00000572253 PLCH2O75038 1416 aa13.95□□□□□ -0.18
CCDC40-207ENST00000572253 RGS3P49796 1198 aa13.95□□□□□ -0.18
CCDC40-207ENST00000572253 SCAPERQ9BY12 1400 aa13.95□□□□□ -0.18
CCDC40-207ENST00000572253 E9PSI1 815 aa13.95□□□□□ -0.18
CCDC40-207ENST00000572253 CCDC146Q8IYE0 955 aa13.95□□□□□ -0.18
CCDC40-207ENST00000572253 KANK1Q14678 1352 aa13.95□□□□□ -0.18
CCDC40-207ENST00000572253 CLASP1Q7Z460 1538 aa13.94□□□□□ -0.18
CCDC40-207ENST00000572253 ABCC2Q92887 1545 aa13.94□□□□□ -0.18
CCDC40-207ENST00000572253 APAF1O14727 1248 aa13.93□□□□□ -0.18
CCDC40-207ENST00000572253 CANXP27824 592 aaKnown RBP13.93□□□□□ -0.18
CCDC40-207ENST00000572253 MADDQ8WXG6 1647 aa13.93□□□□□ -0.18
CCDC40-207ENST00000572253 NFKBIBQ15653 356 aa13.93□□□□□ -0.18
CCDC40-207ENST00000572253 NKTRP30414 1462 aaKnown RBP13.93□□□□□ -0.18
CCDC40-207ENST00000572253 GSE1Q14687 1217 aa13.92□□□□□ -0.18
CCDC40-207ENST00000572253 IQGAP1P46940 1657 aa13.92□□□□□ -0.18
CCDC40-207ENST00000572253 TRPM2O94759 1503 aa13.91□□□□□ -0.18
CCDC40-207ENST00000572253 SLC4A3P48751 1232 aa13.91□□□□□ -0.18
CCDC40-207ENST00000572253 C8orf34Q49A92 452 aa13.91□□□□□ -0.18
CCDC40-207ENST00000572253 CGNL1Q0VF96 1302 aa13.91□□□□□ -0.18
CCDC40-207ENST00000572253 TRMT2AQ8IZ69 625 aaKnown RBP13.9□□□□□ -0.18
CCDC40-207ENST00000572253 TRAPPC8Q9Y2L5 1435 aa13.89□□□□□ -0.19
CCDC40-207ENST00000572253 NINLQ9Y2I6 1382 aa13.89□□□□□ -0.19
CCDC40-207ENST00000572253 IL27Q8NEV9 243 aa13.89□□□□□ -0.19
CCDC40-207ENST00000572253 RTEL1-TNFRSF6BF6WH68 1400 aa13.89□□□□□ -0.19
CCDC40-207ENST00000572253 PDE3AQ14432 1141 aa13.89□□□□□ -0.19
CCDC40-207ENST00000572253 ABCC1P33527 1531 aa13.88□□□□□ -0.19
CCDC40-207ENST00000572253 PTPRTO14522 1441 aa13.88□□□□□ -0.19
CCDC40-207ENST00000572253 CENPJQ9HC77 1338 aaPredicted RBP13.88□□□□□ -0.19
CCDC40-207ENST00000572253 SPHKAPQ2M3C7 1700 aa13.88□□□□□ -0.19
CCDC40-207ENST00000572253 MAPK8IP3Q9UPT6 1336 aa13.87□□□□□ -0.19
CCDC40-207ENST00000572253 BCAR3O75815 825 aa13.87□□□□□ -0.19
CCDC40-207ENST00000572253 KDM5AP29375 1690 aaKnown RBP13.87□□□□□ -0.19
CCDC40-207ENST00000572253 BECN1Q14457 450 aa13.86□□□□□ -0.19
CCDC40-207ENST00000572253 AFAP1Q8N556 730 aa13.86□□□□□ -0.19
CCDC40-207ENST00000572253 RTN4Q9NQC3 1192 aaKnown RBP13.85□□□□□ -0.19
CCDC40-207ENST00000572253 CEP152O94986 1710 aa13.85□□□□□ -0.19
CCDC40-207ENST00000572253 SHROOM2Q13796 1616 aa13.85□□□□□ -0.19
CCDC40-207ENST00000572253 CHD1O14646 1710 aa13.84□□□□□ -0.19
CCDC40-207ENST00000572253 KIF3BO15066 747 aa13.84□□□□□ -0.19
CCDC40-207ENST00000572253 PRKCSHP14314 528 aaPredicted RBP13.84□□□□□ -0.19
CCDC40-207ENST00000572253 CFAP70Q5T0N1 1121 aa13.84□□□□□ -0.19
CCDC40-207ENST00000572253 CLUAP1Q96AJ1 413 aa13.84□□□□□ -0.19
CCDC40-207ENST00000572253 SPINK5Q9NQ38 1064 aaPredicted RBP13.84□□□□□ -0.19
CCDC40-207ENST00000572253 CLTCL1P53675 1640 aa13.84□□□□□ -0.19
CCDC40-207ENST00000572253 AAMPQ13685 434 aa13.83□□□□□ -0.19
CCDC40-207ENST00000572253 UPF2Q9HAU5 1272 aaKnown RBP13.83□□□□□ -0.2
CCDC40-207ENST00000572253 MORC1Q86VD1 984 aa13.82□□□□□ -0.2
CCDC40-207ENST00000572253 KIAA1210Q9ULL0 1709 aa13.82□□□□□ -0.2
CCDC40-207ENST00000572253 TET3O43151 1660 aa13.82□□□□□ -0.2
CCDC40-207ENST00000572253 FRAT1Q92837 279 aaPredicted RBP13.82□□□□□ -0.2
CCDC40-207ENST00000572253 PMFBP1Q8TBY8 1022 aa13.82□□□□□ -0.2
CCDC40-207ENST00000572253 POLR3AO14802 1390 aaPredicted RBP13.82□□□□□ -0.2
CCDC40-207ENST00000572253 COG6Q9Y2V7 657 aa13.81□□□□□ -0.2
CCDC40-207ENST00000572253 WWC1Q8IX03 1113 aa13.81□□□□□ -0.2
CCDC40-207ENST00000572253 ZFYVE16Q7Z3T8 1539 aa13.81□□□□□ -0.2
CCDC40-207ENST00000572253 MYOM1P52179 1685 aa13.81□□□□□ -0.2
CCDC40-207ENST00000572253 UHRF1BP1LA0JNW5 1464 aa13.8□□□□□ -0.2
CCDC40-207ENST00000572253 ERVK-7P63135 1459 aa13.8□□□□□ -0.2
CCDC40-207ENST00000572253 CFAP53Q96M91 514 aa13.8□□□□□ -0.2
CCDC40-207ENST00000572253 MYOM2P54296 1465 aa13.8□□□□□ -0.2
CCDC40-207ENST00000572253 ZCCHC11Q5TAX3 1644 aaKnown RBP13.8□□□□□ -0.2
CCDC40-207ENST00000572253 IGHDP01880 384 aa13.8□□□□□ -0.2
CCDC40-207ENST00000572253 PANK1Q8TE04 598 aa13.8□□□□□ -0.2
CCDC40-207ENST00000572253 RUNDC1Q96C34 613 aa13.8□□□□□ -0.2
CCDC40-207ENST00000572253 CARD14Q9BXL6 1004 aa13.8□□□□□ -0.2
CCDC40-207ENST00000572253 ARAP3Q8WWN8 1544 aa13.79□□□□□ -0.2
CCDC40-207ENST00000572253 FRAT2O75474 233 aaPredicted RBP13.79□□□□□ -0.2
CCDC40-207ENST00000572253 NEUROD2Q15784 382 aa13.79□□□□□ -0.2
CCDC40-207ENST00000572253 ADGRF5Q8IZF2 1346 aa13.79□□□□□ -0.2
CCDC40-207ENST00000572253 ERCC6L2Q5T890 1561 aa13.79□□□□□ -0.2
CCDC40-207ENST00000572253 NEURL4Q96JN8 1562 aa13.78□□□□□ -0.2
CCDC40-207ENST00000572253 SBNO2Q9Y2G9 1366 aa13.78□□□□□ -0.2
CCDC40-207ENST00000572253 CHGAP10645 457 aaKnown RBP13.78□□□□□ -0.2
CCDC40-207ENST00000572253 BRPF3Q9ULD4 1205 aa13.78□□□□□ -0.2
CCDC40-207ENST00000572253 DMRT2Q9Y5R5 561 aa13.77□□□□□ -0.21
CCDC40-207ENST00000572253 DEPDC5O75140 1603 aa13.77□□□□□ -0.21
CCDC40-207ENST00000572253 MAP3K4Q9Y6R4 1608 aa13.77□□□□□ -0.21
CCDC40-207ENST00000572253 ATP7AQ04656 1500 aa13.77□□□□□ -0.21
CCDC40-207ENST00000572253 TNNT2P45379 298 aaPredicted RBP13.76□□□□□ -0.21
CCDC40-207ENST00000572253 WDR63Q8IWG1 891 aa13.76□□□□□ -0.21
CCDC40-207ENST00000572253 RWDD1Q9H446 243 aaPredicted RBP13.76□□□□□ -0.21
CCDC40-207ENST00000572253 NSD3Q9BZ95 1437 aa13.76□□□□□ -0.21
CCDC40-207ENST00000572253 MYH16Q9H6N6 1097 aa13.75□□□□□ -0.21
CCDC40-207ENST00000572253 RARSP54136 660 aaKnown RBP13.75□□□□□ -0.21
CCDC40-207ENST00000572253 TCP11L2Q8N4U5 519 aa13.75□□□□□ -0.21
CCDC40-207ENST00000572253 RRP7AQ9Y3A4 280 aaKnown RBP13.74□□□□□ -0.21
CCDC40-207ENST00000572253 ABCA6Q8N139 1617 aa13.74□□□□□ -0.21
CCDC40-207ENST00000572253 FANCAO15360 1455 aa13.74□□□□□ -0.21
CCDC40-207ENST00000572253 VWDEQ8N2E2 1590 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms