RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 MYOM3Q5VTT5 1437 aa17.49■□□□□ 0.39
VPS53-207ENST00000570510 CADPS2Q86UW7 1296 aa17.49■□□□□ 0.39
VPS53-207ENST00000570510 ERBINQ96RT1 1412 aa17.47■□□□□ 0.39
VPS53-207ENST00000570510 LRP6O75581 1613 aa17.47■□□□□ 0.39
VPS53-207ENST00000570510 FOXD1Q16676 465 aa17.47■□□□□ 0.39
VPS53-207ENST00000570510 SLC52A1Q9NWF4 448 aa17.47■□□□□ 0.39
VPS53-207ENST00000570510 TET3O43151 1660 aa17.47■□□□□ 0.39
VPS53-207ENST00000570510 NUTM2DQ5VT03 806 aaPredicted RBP17.45■□□□□ 0.38
VPS53-207ENST00000570510 C19orf44Q9H6X5 657 aa17.45■□□□□ 0.38
VPS53-207ENST00000570510 COL16A1Q07092 1604 aaPredicted RBP17.44■□□□□ 0.38
VPS53-207ENST00000570510 KDM5AP29375 1690 aaKnown RBP17.44■□□□□ 0.38
VPS53-207ENST00000570510 NWD1Q149M9 1564 aa17.44■□□□□ 0.38
VPS53-207ENST00000570510 AFF2P51816 1311 aa17.44■□□□□ 0.38
VPS53-207ENST00000570510 CDK12Q9NYV4 1490 aaPredicted RBP17.42■□□□□ 0.38
VPS53-207ENST00000570510 NCOA3Q9Y6Q9 1424 aa17.41■□□□□ 0.38
VPS53-207ENST00000570510 CHGAP10645 457 aaKnown RBP17.41■□□□□ 0.38
VPS53-207ENST00000570510 QTRT2Q9H974 415 aaKnown RBP17.41■□□□□ 0.38
VPS53-207ENST00000570510 PLEKHG1Q9ULL1 1385 aa17.4■□□□□ 0.38
VPS53-207ENST00000570510 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.4■□□□□ 0.38
VPS53-207ENST00000570510 C8orf37Q96NL8 207 aa17.4■□□□□ 0.38
VPS53-207ENST00000570510 TBX22Q9Y458 520 aa17.4■□□□□ 0.38
VPS53-207ENST00000570510 ADGRB3O60242 1522 aa17.4■□□□□ 0.38
VPS53-207ENST00000570510 RBM6P78332 1123 aaKnown RBP17.39■□□□□ 0.37
VPS53-207ENST00000570510 CHIC2Q9UKJ5 165 aa17.39■□□□□ 0.37
VPS53-207ENST00000570510 ZRANB1Q9UGI0 708 aa17.38■□□□□ 0.37
VPS53-207ENST00000570510 KANK4Q5T7N3 995 aaPredicted RBP17.37■□□□□ 0.37
VPS53-207ENST00000570510 BRINP3Q76B58 766 aa17.37■□□□□ 0.37
VPS53-207ENST00000570510 NGLY1Q96IV0 654 aa17.37■□□□□ 0.37
VPS53-207ENST00000570510 ANKRD30AQ9BXX3 1397 aa17.37■□□□□ 0.37
VPS53-207ENST00000570510 SRCAPQ6ZRS2 3230 aa17.37■□□□□ 0.37
VPS53-207ENST00000570510 RIMS2Q9UQ26 1411 aa17.37■□□□□ 0.37
VPS53-207ENST00000570510 SHPRHQ149N8 1683 aa17.36■□□□□ 0.37
VPS53-207ENST00000570510 LRRC59Q96AG4 307 aaKnown RBP17.36■□□□□ 0.37
VPS53-207ENST00000570510 NOS1P29475 1434 aa17.36■□□□□ 0.37
VPS53-207ENST00000570510 AHDC1Q5TGY3 1603 aaPredicted RBP17.36■□□□□ 0.37
VPS53-207ENST00000570510 ABCC5O15440 1437 aa17.35■□□□□ 0.37
VPS53-207ENST00000570510 LMTK2Q8IWU2 1503 aa17.34■□□□□ 0.37
VPS53-207ENST00000570510 CHD2O14647 1828 aaKnown RBP17.33■□□□□ 0.37
VPS53-207ENST00000570510 APLP2Q06481 763 aa17.33■□□□□ 0.36
VPS53-207ENST00000570510 ATAD2Q6PL18 1390 aa17.32■□□□□ 0.36
VPS53-207ENST00000570510 AMOTL2Q9Y2J4 779 aa17.32■□□□□ 0.36
VPS53-207ENST00000570510 RGS12O14924 1447 aa17.31■□□□□ 0.36
VPS53-207ENST00000570510 ZFYVE9O95405 1425 aa17.31■□□□□ 0.36
VPS53-207ENST00000570510 DAPK1P53355 1430 aa17.3■□□□□ 0.36
VPS53-207ENST00000570510 VPS8Q8N3P4 1428 aa17.3■□□□□ 0.36
VPS53-207ENST00000570510 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.3■□□□□ 0.36
VPS53-207ENST00000570510 PIK3R4Q99570 1358 aa17.29■□□□□ 0.36
VPS53-207ENST00000570510 ADAMTS2O95450 1211 aa17.29■□□□□ 0.36
VPS53-207ENST00000570510 CROCC2H7BZ55 1655 aa17.27■□□□□ 0.36
VPS53-207ENST00000570510 RPRD2Q5VT52 1461 aaKnown RBP17.27■□□□□ 0.36
VPS53-207ENST00000570510 SETD5Q9C0A6 1442 aa17.27■□□□□ 0.35
VPS53-207ENST00000570510 PTPN23Q9H3S7 1636 aa17.25■□□□□ 0.35
VPS53-207ENST00000570510 USP21Q9UK80 565 aa17.25■□□□□ 0.35
VPS53-207ENST00000570510 ASXL1Q8IXJ9 1541 aa17.25■□□□□ 0.35
VPS53-207ENST00000570510 DIP2AQ14689 1571 aa17.24■□□□□ 0.35
VPS53-207ENST00000570510 DCCP43146 1447 aa17.24■□□□□ 0.35
VPS53-207ENST00000570510 TRPC5Q9UL62 973 aaPredicted RBP17.24■□□□□ 0.35
VPS53-207ENST00000570510 ADAMTS13Q76LX8 1427 aa17.23■□□□□ 0.35
VPS53-207ENST00000570510 DDX17Q92841 729 aaKnown RBP17.23■□□□□ 0.35
VPS53-207ENST00000570510 GCC2Q8IWJ2 1684 aa17.23■□□□□ 0.35
VPS53-207ENST00000570510 TRPM2O94759 1503 aa17.22■□□□□ 0.35
VPS53-207ENST00000570510 CCDC125Q86Z20 511 aa17.22■□□□□ 0.35
VPS53-207ENST00000570510 PNPLA6Q8IY17 1366 aa17.22■□□□□ 0.35
VPS53-207ENST00000570510 MYO5BQ9ULV0 1848 aa17.21■□□□□ 0.35
VPS53-207ENST00000570510 TMEM131LA2VDJ0 1609 aa17.21■□□□□ 0.35
VPS53-207ENST00000570510 FAM50AQ14320 339 aaKnown RBP17.19■□□□□ 0.34
VPS53-207ENST00000570510 MST1RQ04912 1400 aa17.19■□□□□ 0.34
VPS53-207ENST00000570510 ANKRD50Q9ULJ7 1429 aa17.19■□□□□ 0.34
VPS53-207ENST00000570510 ZNF326Q5BKZ1 582 aaKnown RBP17.17■□□□□ 0.34
VPS53-207ENST00000570510 PTPRUQ92729 1446 aa17.16■□□□□ 0.34
VPS53-207ENST00000570510 NHSL1Q5SYE7 1610 aa17.14■□□□□ 0.33
VPS53-207ENST00000570510 SF3B2Q13435 895 aaKnown RBP17.13■□□□□ 0.33
VPS53-207ENST00000570510 SETBP1Q9Y6X0 1596 aa17.13■□□□□ 0.33
VPS53-207ENST00000570510 FNBP4Q8N3X1 1017 aaPredicted RBP17.12■□□□□ 0.33
VPS53-207ENST00000570510 ADGRL3Q9HAR2 1447 aa17.11■□□□□ 0.33
VPS53-207ENST00000570510 LOC105371045A0A1W2PR82 267 aa17.1■□□□□ 0.33
VPS53-207ENST00000570510 ADGRL2O95490 1459 aa17.1■□□□□ 0.33
VPS53-207ENST00000570510 PTCH1Q13635 1447 aa17.09■□□□□ 0.33
VPS53-207ENST00000570510 ORAI2Q96SN7 254 aa17.08■□□□□ 0.32
VPS53-207ENST00000570510 UNC13BO14795 1591 aa17.07■□□□□ 0.32
VPS53-207ENST00000570510 C1orf167Q5SNV9 1468 aa17.07■□□□□ 0.32
VPS53-207ENST00000570510 ATRNO75882 1429 aa17.07■□□□□ 0.32
VPS53-207ENST00000570510 METP08581 1390 aa17.07■□□□□ 0.32
VPS53-207ENST00000570510 SOS2Q07890 1332 aaPredicted RBP17.07■□□□□ 0.32
VPS53-207ENST00000570510 GJD4Q96KN9 370 aaPredicted RBP17.07■□□□□ 0.32
VPS53-207ENST00000570510 XRN1Q8IZH2 1706 aaKnown RBP17.04■□□□□ 0.32
VPS53-207ENST00000570510 NUP155O75694 1391 aa17.04■□□□□ 0.32
VPS53-207ENST00000570510 BLMP54132 1417 aaPredicted RBP17.04■□□□□ 0.32
VPS53-207ENST00000570510 EP400Q96L91 3159 aa17.03■□□□□ 0.32
VPS53-207ENST00000570510 E9PCH4 1651 aa17.02■□□□□ 0.32
VPS53-207ENST00000570510 DEFB132Q7Z7B7 95 aa17.02■□□□□ 0.32
VPS53-207ENST00000570510 NPHP3Q7Z494 1330 aa17.01■□□□□ 0.31
VPS53-207ENST00000570510 ESCO1Q5FWF5 840 aa17.01■□□□□ 0.31
VPS53-207ENST00000570510 BCL9LQ86UU0 1499 aa16.99■□□□□ 0.31
VPS53-207ENST00000570510 HAP1P54257 671 aaPredicted RBP16.98■□□□□ 0.31
VPS53-207ENST00000570510 UNC5CLQ8IV45 518 aa16.98■□□□□ 0.31
VPS53-207ENST00000570510 NALCNQ8IZF0 1738 aa16.98■□□□□ 0.31
VPS53-207ENST00000570510 NRXN3Q9Y4C0 1643 aa16.97■□□□□ 0.31
VPS53-207ENST00000570510 XPCQ01831 940 aaPredicted RBP16.97■□□□□ 0.31
VPS53-207ENST00000570510 CCDC9Q9Y3X0 531 aaKnown RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms