RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ADGRB3O60242 1522 aa28.99■■■□□ 2.23
CLK3-227ENST00000570296 BCANQ96GW7 911 aa28.95■■■□□ 2.22
CLK3-227ENST00000570296 KANK1Q14678 1352 aa28.94■■■□□ 2.22
CLK3-227ENST00000570296 KIF15Q9NS87 1388 aa28.94■■■□□ 2.22
CLK3-227ENST00000570296 LMTK2Q8IWU2 1503 aa28.94■■■□□ 2.22
CLK3-227ENST00000570296 DIP2AQ14689 1571 aa28.93■■■□□ 2.22
CLK3-227ENST00000570296 MYOM3Q5VTT5 1437 aa28.92■■■□□ 2.22
CLK3-227ENST00000570296 CADPS2Q86UW7 1296 aa28.91■■■□□ 2.22
CLK3-227ENST00000570296 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.91■■■□□ 2.22
CLK3-227ENST00000570296 AFF2P51816 1311 aa28.91■■■□□ 2.22
CLK3-227ENST00000570296 PLEKHG1Q9ULL1 1385 aa28.9■■■□□ 2.22
CLK3-227ENST00000570296 RGS12O14924 1447 aa28.9■■■□□ 2.22
CLK3-227ENST00000570296 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.9■■■□□ 2.223e-9■■■■■ 27.4
CLK3-227ENST00000570296 NOS1P29475 1434 aa28.89■■■□□ 2.22
CLK3-227ENST00000570296 C14orf37Q86TY3 774 aa28.87■■■□□ 2.21
CLK3-227ENST00000570296 ZFYVE9O95405 1425 aa28.86■■■□□ 2.21
CLK3-227ENST00000570296 NUTM2BA6NNL0 878 aaPredicted RBP28.86■■■□□ 2.21
CLK3-227ENST00000570296 NUTM2EB1AL46 878 aaPredicted RBP28.86■■■□□ 2.21
CLK3-227ENST00000570296 NUTM2AQ8IVF1 878 aaPredicted RBP28.86■■■□□ 2.21
CLK3-227ENST00000570296 SLC52A1Q9NWF4 448 aa28.86■■■□□ 2.21
CLK3-227ENST00000570296 ATF3P18847 181 aa28.85■■■□□ 2.21
CLK3-227ENST00000570296 C19orf44Q9H6X5 657 aa28.85■■■□□ 2.21
CLK3-227ENST00000570296 CROCC2H7BZ55 1655 aa28.85■■■□□ 2.21
CLK3-227ENST00000570296 RBM6P78332 1123 aaKnown RBP28.84■■■□□ 2.21
CLK3-227ENST00000570296 FOXD1Q16676 465 aa28.83■■■□□ 2.21
CLK3-227ENST00000570296 TBX22Q9Y458 520 aa28.82■■■□□ 2.2
CLK3-227ENST00000570296 MYO5BQ9ULV0 1848 aa28.8■■■□□ 2.2
CLK3-227ENST00000570296 RRP7BPQ9NSQ0 103 aa28.8■■■□□ 2.2
CLK3-227ENST00000570296 SETD5Q9C0A6 1442 aa28.79■■■□□ 2.2
CLK3-227ENST00000570296 HDGFP51858 240 aaKnown RBP28.79■■■□□ 2.2
CLK3-227ENST00000570296 NUTM2DQ5VT03 806 aaPredicted RBP28.79■■■□□ 2.2
CLK3-227ENST00000570296 BRINP3Q76B58 766 aa28.79■■■□□ 2.2
CLK3-227ENST00000570296 PPP1R15AO75807 674 aaPredicted RBP28.78■■■□□ 2.2
CLK3-227ENST00000570296 QTRT2Q9H974 415 aaKnown RBP28.78■■■□□ 2.2
CLK3-227ENST00000570296 RIMS2Q9UQ26 1411 aa28.77■■■□□ 2.2
CLK3-227ENST00000570296 ATAD2Q6PL18 1390 aa28.77■■■□□ 2.2
CLK3-227ENST00000570296 ZRANB1Q9UGI0 708 aa28.77■■■□□ 2.2
CLK3-227ENST00000570296 PIK3R4Q99570 1358 aa28.75■■■□□ 2.19
CLK3-227ENST00000570296 ABCC5O15440 1437 aa28.75■■■□□ 2.19
CLK3-227ENST00000570296 ASXL1Q8IXJ9 1541 aa28.74■■■□□ 2.19
CLK3-227ENST00000570296 GCC2Q8IWJ2 1684 aa28.74■■■□□ 2.19
CLK3-227ENST00000570296 NHSL1Q5SYE7 1610 aa28.73■■■□□ 2.19
CLK3-227ENST00000570296 DCCP43146 1447 aa28.72■■■□□ 2.19
CLK3-227ENST00000570296 C8orf37Q96NL8 207 aa28.72■■■□□ 2.19
CLK3-227ENST00000570296 RPRD2Q5VT52 1461 aaKnown RBP28.72■■■□□ 2.19
CLK3-227ENST00000570296 NGLY1Q96IV0 654 aa28.71■■■□□ 2.19
CLK3-227ENST00000570296 TMEM131LA2VDJ0 1609 aa28.71■■■□□ 2.19
CLK3-227ENST00000570296 ADAMTS13Q76LX8 1427 aa28.7■■■□□ 2.19
CLK3-227ENST00000570296 LRRC59Q96AG4 307 aaKnown RBP28.69■■■□□ 2.18
CLK3-227ENST00000570296 SETBP1Q9Y6X0 1596 aa28.68■■■□□ 2.18
CLK3-227ENST00000570296 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.68■■■□□ 2.18
CLK3-227ENST00000570296 EP400Q96L91 3159 aa28.66■■■□□ 2.18
CLK3-227ENST00000570296 DAPK1P53355 1430 aa28.64■■■□□ 2.18
CLK3-227ENST00000570296 TRPM2O94759 1503 aa28.64■■■□□ 2.17
CLK3-227ENST00000570296 PNPLA6Q8IY17 1366 aa28.63■■■□□ 2.17
CLK3-227ENST00000570296 ANKRD30AQ9BXX3 1397 aa28.62■■■□□ 2.17
CLK3-227ENST00000570296 PTPN23Q9H3S7 1636 aa28.61■■■□□ 2.17
CLK3-227ENST00000570296 MST1RQ04912 1400 aa28.61■■■□□ 2.17
CLK3-227ENST00000570296 KANK4Q5T7N3 995 aaPredicted RBP28.58■■■□□ 2.17
CLK3-227ENST00000570296 AMOTL2Q9Y2J4 779 aa28.58■■■□□ 2.17
CLK3-227ENST00000570296 CCDC125Q86Z20 511 aa28.57■■■□□ 2.16
CLK3-227ENST00000570296 VPS8Q8N3P4 1428 aa28.56■■■□□ 2.16
CLK3-227ENST00000570296 PTPRUQ92729 1446 aa28.56■■■□□ 2.16
CLK3-227ENST00000570296 TRPC5Q9UL62 973 aaPredicted RBP28.54■■■□□ 2.16
CLK3-227ENST00000570296 XRN1Q8IZH2 1706 aaKnown RBP28.54■■■□□ 2.16
CLK3-227ENST00000570296 UNC13BO14795 1591 aa28.51■■■□□ 2.15
CLK3-227ENST00000570296 ADAMTS2O95450 1211 aa28.51■■■□□ 2.15
CLK3-227ENST00000570296 USP21Q9UK80 565 aa28.51■■■□□ 2.15
CLK3-227ENST00000570296 CHIC2Q9UKJ5 165 aa28.49■■■□□ 2.15
CLK3-227ENST00000570296 CHGAP10645 457 aaKnown RBP28.48■■■□□ 2.15
CLK3-227ENST00000570296 ATRNO75882 1429 aa28.48■■■□□ 2.15
CLK3-227ENST00000570296 DDX17Q92841 729 aaKnown RBP28.47■■■□□ 2.15
CLK3-227ENST00000570296 LAMC1P11047 1609 aa28.47■■■□□ 2.15
CLK3-227ENST00000570296 PTCH1Q13635 1447 aa28.46■■■□□ 2.15
CLK3-227ENST00000570296 FNBP4Q8N3X1 1017 aaPredicted RBP28.45■■■□□ 2.14
CLK3-227ENST00000570296 ADGRL2O95490 1459 aa28.44■■■□□ 2.14
CLK3-227ENST00000570296 ADGRL3Q9HAR2 1447 aa28.43■■■□□ 2.14
CLK3-227ENST00000570296 LRP5O75197 1615 aa28.43■■■□□ 2.14
CLK3-227ENST00000570296 NRXN3Q9Y4C0 1643 aa28.41■■■□□ 2.14
CLK3-227ENST00000570296 NALCNQ8IZF0 1738 aa28.39■■■□□ 2.14
CLK3-227ENST00000570296 ANKRD50Q9ULJ7 1429 aa28.39■■■□□ 2.14
CLK3-227ENST00000570296 E9PCH4 1651 aa28.37■■■□□ 2.13
CLK3-227ENST00000570296 COL22A1Q8NFW1 1626 aaPredicted RBP28.36■■■□□ 2.13
CLK3-227ENST00000570296 SOS2Q07890 1332 aaPredicted RBP28.36■■■□□ 2.13
CLK3-227ENST00000570296 C1orf167Q5SNV9 1468 aa28.35■■■□□ 2.13
CLK3-227ENST00000570296 BLMP54132 1417 aaPredicted RBP28.34■■■□□ 2.13
CLK3-227ENST00000570296 IQGAP3Q86VI3 1631 aa28.32■■■□□ 2.12
CLK3-227ENST00000570296 MARF1Q9Y4F3 1742 aaKnown RBP28.3■■■□□ 2.12
CLK3-227ENST00000570296 BCL9LQ86UU0 1499 aa28.3■■■□□ 2.12
CLK3-227ENST00000570296 METP08581 1390 aa28.3■■■□□ 2.12
CLK3-227ENST00000570296 MYOM2P54296 1465 aa28.27■■■□□ 2.12
CLK3-227ENST00000570296 GJD4Q96KN9 370 aaPredicted RBP28.26■■■□□ 2.11
CLK3-227ENST00000570296 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.25■■■□□ 2.11
CLK3-227ENST00000570296 SPHKAPQ2M3C7 1700 aa28.23■■■□□ 2.11
CLK3-227ENST00000570296 ORAI2Q96SN7 254 aa28.21■■■□□ 2.11
CLK3-227ENST00000570296 DEFB132Q7Z7B7 95 aa28.2■■■□□ 2.1
CLK3-227ENST00000570296 SF3B2Q13435 895 aaKnown RBP28.19■■■□□ 2.1
CLK3-227ENST00000570296 BRWD3Q6RI45 1802 aa28.18■■■□□ 2.1
CLK3-227ENST00000570296 GLI3P10071 1580 aa28.16■■■□□ 2.1
CLK3-227ENST00000570296 RALGAPBQ86X10 1494 aa28.15■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms